Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACCE15_RS24395 Genome accession   NZ_CP168118
Coordinates   5399809..5401296 (+) Length   495 a.a.
NCBI ID   WP_372821733.1    Uniprot ID   -
Organism   Pseudomonas parafulva strain SE729     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5394809..5406296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCE15_RS24380 (ACCE15_24380) - 5394873..5396315 (+) 1443 WP_372822914.1 TolC family protein -
  ACCE15_RS24385 (ACCE15_24385) - 5396308..5397567 (+) 1260 WP_054925358.1 efflux RND transporter periplasmic adaptor subunit -
  ACCE15_RS24390 (ACCE15_24390) leuA 5397745..5399442 (-) 1698 WP_372821732.1 2-isopropylmalate synthase -
  ACCE15_RS24395 (ACCE15_24395) comM 5399809..5401296 (+) 1488 WP_372821733.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACCE15_RS24400 (ACCE15_24400) - 5401642..5402682 (+) 1041 WP_372821734.1 alpha/beta fold hydrolase -
  ACCE15_RS24405 (ACCE15_24405) - 5402712..5403479 (+) 768 WP_054893700.1 SDR family NAD(P)-dependent oxidoreductase -
  ACCE15_RS24410 (ACCE15_24410) - 5403544..5404821 (+) 1278 WP_372822915.1 epoxide hydrolase family protein -
  ACCE15_RS24415 (ACCE15_24415) - 5404963..5405316 (+) 354 WP_054893702.1 helix-turn-helix domain-containing protein -
  ACCE15_RS24420 (ACCE15_24420) - 5405607..5405861 (+) 255 WP_372821735.1 DUF2790 domain-containing protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 52914.68 Da        Isoelectric Point: 7.9133

>NTDB_id=1042340 ACCE15_RS24395 WP_372821733.1 5399809..5401296(+) (comM) [Pseudomonas parafulva strain SE729]
MSLALVHSRAQVGVLAPAVSVETHLANGLPNLTLVGLPEATVKESKDRVRSAIVNSGLEYPARRITQSLAPADLPKDGGR
YDLAIALGILAANGQVPVATLVDFECLGELALSGALRPVQGVLPAALAAREAGRALVVPRENAEEASLASGLVVYAVGHL
QELVAHLNGQAPLPAYAANGLMLRARPYPDLSEVQGQIAAKRALLVAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVSGKAPIDCWPQRPFRHPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVISRARDRVRFPARFQLVAAMNPCPCGYLGDPAARCRCSPEQIQRYRNKLSGPLLDRIDLHLTVARESTTLSHQPSG
ETSASVAAQVAQTRERQQRRQGCANAFLDMPGLRKHCDLKAADQSWLEGACERLNLSLRAAHRLLKVARTLADLEQAEHI
DRSHLAEALQYRPAG

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=1042340 ACCE15_RS24395 WP_372821733.1 5399809..5401296(+) (comM) [Pseudomonas parafulva strain SE729]
ATGTCCCTCGCCCTCGTCCACAGCCGCGCCCAGGTCGGGGTGCTGGCGCCCGCTGTCAGCGTCGAAACCCACTTGGCCAA
CGGTCTGCCTAACCTCACCCTGGTCGGCCTCCCCGAGGCCACGGTCAAGGAAAGCAAGGACCGGGTACGCAGTGCCATCG
TCAATTCCGGCCTCGAATACCCGGCCCGACGCATCACCCAGAGTCTCGCCCCCGCTGACTTGCCCAAGGATGGCGGGCGC
TACGACCTTGCCATCGCCTTGGGCATCCTCGCCGCCAACGGCCAGGTGCCGGTGGCGACCTTGGTCGATTTCGAATGCCT
GGGCGAGTTGGCGCTATCCGGGGCATTGCGCCCGGTGCAGGGCGTGCTGCCAGCGGCGCTGGCGGCGCGGGAGGCCGGGC
GGGCACTGGTGGTGCCGCGGGAGAATGCCGAGGAGGCGAGTTTGGCCAGTGGGCTGGTGGTGTATGCGGTCGGGCACCTG
CAGGAGCTGGTAGCACATCTCAATGGCCAGGCACCGCTGCCAGCCTATGCCGCCAATGGCTTGATGCTACGCGCGCGCCC
CTATCCGGACCTGAGCGAAGTACAGGGGCAGATCGCGGCCAAGCGCGCCCTTCTAGTCGCGGCGGCGGGGGCGCACAATC
TGCTGTTTACCGGGCCACCCGGCACTGGCAAGACCTTGCTTGCCAGCCGCCTGCCGGGCTTGCTGCCGCCGCTGGACGAG
CACGAGGCGCTGGAGGTTGCGGCCATCCAGTCGGTCAGCGGCAAGGCACCGATCGACTGCTGGCCACAGCGGCCGTTTCG
CCACCCTCATCACAGCGCGTCGGGCCCGGCACTGGTCGGTGGCGGCAGTCGGCCACAGCCTGGGGAAATCACCCTGGCCC
ATCATGGGGTGCTGTTTCTCGACGAACTGCCCGAGTTCGAACGGCGTGTGCTGGAGGTGCTGCGCGAGCCGCTGGAGTCT
GGCGAGATCGTGATTTCACGGGCCCGGGACCGGGTGCGCTTTCCTGCGCGCTTTCAGCTTGTAGCGGCGATGAATCCCTG
CCCCTGCGGCTACCTGGGCGACCCGGCAGCCCGCTGCCGGTGCAGCCCTGAGCAGATCCAGCGCTACCGCAACAAGCTCT
CGGGCCCGCTGCTCGACCGCATCGACCTGCACCTGACCGTCGCACGCGAAAGCACCACCCTCAGCCACCAGCCCAGTGGC
GAGACCAGCGCCAGCGTCGCCGCGCAGGTCGCCCAGACCCGCGAGCGGCAACAGCGTCGCCAGGGTTGTGCCAACGCGTT
TCTCGATATGCCAGGCCTGCGCAAACATTGCGACCTGAAAGCCGCCGACCAGTCATGGTTGGAGGGCGCGTGCGAGCGAC
TCAATCTTTCGTTGCGCGCCGCCCACCGTCTGCTCAAGGTCGCCCGCACCCTGGCCGACCTTGAACAGGCCGAACATATC
GATCGTTCCCACTTGGCTGAAGCCCTGCAATATCGACCCGCCGGTTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.734

100

0.56
  comM Haemophilus influenzae Rd KW20

54.709

100

0.552
  comM Vibrio cholerae strain A1552

54.839

100

0.549
  comM Glaesserella parasuis strain SC1401

53.187

100

0.539
  comM Legionella pneumophila str. Paris

49.395

100

0.495
  comM Legionella pneumophila strain ERS1305867

49.395

100

0.495
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.809

100

0.485

Multiple sequence alignment