Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | ACCK22_RS06250 | Genome accession | NZ_CP168085 |
| Coordinates | 1228588..1229058 (+) | Length | 156 a.a. |
| NCBI ID | WP_064137532.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain CUBIST-27 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1218749..1261288 | 1228588..1229058 | within | 0 |
Gene organization within MGE regions
Location: 1218749..1261288
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACCK22_RS06170 (ACCK22_06170) | - | 1218749..1220134 (-) | 1386 | WP_000861313.1 | recombinase family protein | - |
| ACCK22_RS06175 (ACCK22_06175) | - | 1220341..1221021 (-) | 681 | WP_000392109.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| ACCK22_RS06180 (ACCK22_06180) | - | 1221057..1221776 (-) | 720 | WP_000358220.1 | XRE family transcriptional regulator | - |
| ACCK22_RS06185 (ACCK22_06185) | - | 1221918..1222136 (+) | 219 | WP_001198673.1 | helix-turn-helix transcriptional regulator | - |
| ACCK22_RS06190 (ACCK22_06190) | - | 1222151..1222459 (+) | 309 | WP_001153965.1 | hypothetical protein | - |
| ACCK22_RS06195 (ACCK22_06195) | - | 1222616..1223404 (+) | 789 | WP_001148571.1 | phage antirepressor KilAC domain-containing protein | - |
| ACCK22_RS06200 (ACCK22_06200) | - | 1223421..1223615 (+) | 195 | WP_000390105.1 | hypothetical protein | - |
| ACCK22_RS06205 (ACCK22_06205) | - | 1223668..1223844 (+) | 177 | WP_001094935.1 | hypothetical protein | - |
| ACCK22_RS06210 (ACCK22_06210) | - | 1223819..1224049 (-) | 231 | WP_000395457.1 | hypothetical protein | - |
| ACCK22_RS06215 (ACCK22_06215) | - | 1224099..1224245 (+) | 147 | WP_000230553.1 | hypothetical protein | - |
| ACCK22_RS06220 (ACCK22_06220) | - | 1224229..1224390 (+) | 162 | WP_000066020.1 | DUF1270 domain-containing protein | - |
| ACCK22_RS06225 (ACCK22_06225) | - | 1224483..1224743 (+) | 261 | WP_000291488.1 | DUF1108 family protein | - |
| ACCK22_RS06230 (ACCK22_06230) | - | 1224752..1225015 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| ACCK22_RS06235 (ACCK22_06235) | - | 1225024..1226967 (+) | 1944 | WP_031783568.1 | AAA family ATPase | - |
| ACCK22_RS06240 (ACCK22_06240) | - | 1226969..1227889 (+) | 921 | WP_000138472.1 | recombinase RecT | - |
| ACCK22_RS06245 (ACCK22_06245) | - | 1227970..1228587 (+) | 618 | WP_372496635.1 | MBL fold metallo-hydrolase | - |
| ACCK22_RS06250 (ACCK22_06250) | ssbA | 1228588..1229058 (+) | 471 | WP_064137532.1 | single-stranded DNA-binding protein | Machinery gene |
| ACCK22_RS06255 (ACCK22_06255) | - | 1229088..1229972 (+) | 885 | WP_064137534.1 | DnaD domain protein | - |
| ACCK22_RS06260 (ACCK22_06260) | - | 1229979..1230197 (+) | 219 | WP_001662399.1 | hypothetical protein | - |
| ACCK22_RS06265 (ACCK22_06265) | - | 1230206..1230610 (+) | 405 | WP_001662398.1 | RusA family crossover junction endodeoxyribonuclease | - |
| ACCK22_RS06270 (ACCK22_06270) | - | 1230623..1230994 (+) | 372 | WP_000101268.1 | SA1788 family PVL leukocidin-associated protein | - |
| ACCK22_RS06275 (ACCK22_06275) | - | 1230995..1231243 (+) | 249 | WP_001622146.1 | phi PVL orf 51-like protein | - |
| ACCK22_RS06280 (ACCK22_06280) | - | 1231258..1231650 (+) | 393 | WP_001062709.1 | hypothetical protein | - |
| ACCK22_RS06285 (ACCK22_06285) | - | 1231647..1231838 (+) | 192 | WP_000983947.1 | hypothetical protein | - |
| ACCK22_RS06290 (ACCK22_06290) | - | 1231838..1232269 (+) | 432 | WP_001622147.1 | hypothetical protein | - |
| ACCK22_RS06295 (ACCK22_06295) | - | 1232262..1232510 (+) | 249 | WP_000370293.1 | DUF1024 family protein | - |
| ACCK22_RS06300 (ACCK22_06300) | - | 1232503..1232673 (+) | 171 | WP_001622148.1 | hypothetical protein | - |
| ACCK22_RS06305 (ACCK22_06305) | - | 1232666..1233193 (+) | 528 | WP_000181816.1 | dUTP diphosphatase | - |
| ACCK22_RS06310 (ACCK22_06310) | - | 1233230..1233466 (+) | 237 | WP_000195831.1 | DUF1381 domain-containing protein | - |
| ACCK22_RS06315 (ACCK22_06315) | - | 1233491..1233727 (+) | 237 | WP_000483477.1 | hypothetical protein | - |
| ACCK22_RS06320 (ACCK22_06320) | rinB | 1233720..1233893 (+) | 174 | WP_000595257.1 | transcriptional activator RinB | - |
| ACCK22_RS06325 (ACCK22_06325) | - | 1233894..1234040 (+) | 147 | WP_000989998.1 | hypothetical protein | - |
| ACCK22_RS06330 (ACCK22_06330) | - | 1234064..1234486 (+) | 423 | WP_000162696.1 | RinA family phage transcriptional activator | - |
| ACCK22_RS06335 (ACCK22_06335) | - | 1234673..1235113 (+) | 441 | WP_001003272.1 | terminase small subunit | - |
| ACCK22_RS06340 (ACCK22_06340) | - | 1235100..1236377 (+) | 1278 | WP_000169944.1 | PBSX family phage terminase large subunit | - |
| ACCK22_RS06345 (ACCK22_06345) | - | 1236388..1237923 (+) | 1536 | WP_000921897.1 | phage portal protein | - |
| ACCK22_RS06350 (ACCK22_06350) | - | 1237930..1238925 (+) | 996 | WP_001556698.1 | minor capsid protein | - |
| ACCK22_RS06355 (ACCK22_06355) | - | 1238998..1239168 (+) | 171 | WP_000072207.1 | hypothetical protein | - |
| ACCK22_RS06360 (ACCK22_06360) | - | 1239303..1239917 (+) | 615 | WP_331370037.1 | DUF4355 domain-containing protein | - |
| ACCK22_RS06365 (ACCK22_06365) | - | 1239931..1240905 (+) | 975 | WP_000438512.1 | phage major capsid protein | - |
| ACCK22_RS06370 (ACCK22_06370) | - | 1240927..1241214 (+) | 288 | WP_001114085.1 | hypothetical protein | - |
| ACCK22_RS06375 (ACCK22_06375) | - | 1241223..1241555 (+) | 333 | WP_000208960.1 | phage head-tail connector protein | - |
| ACCK22_RS06380 (ACCK22_06380) | - | 1241552..1241854 (+) | 303 | WP_001268312.1 | hypothetical protein | - |
| ACCK22_RS06385 (ACCK22_06385) | - | 1241854..1242201 (+) | 348 | WP_001017815.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| ACCK22_RS06390 (ACCK22_06390) | - | 1242213..1242596 (+) | 384 | WP_000188643.1 | hypothetical protein | - |
| ACCK22_RS06395 (ACCK22_06395) | - | 1242615..1243196 (+) | 582 | WP_000002577.1 | phage major tail protein, TP901-1 family | - |
| ACCK22_RS06400 (ACCK22_06400) | - | 1243258..1243623 (+) | 366 | WP_001100161.1 | tail assembly chaperone | - |
| ACCK22_RS06405 (ACCK22_06405) | - | 1243653..1243997 (+) | 345 | WP_000105584.1 | hypothetical protein | - |
| ACCK22_RS06410 (ACCK22_06410) | - | 1244014..1247478 (+) | 3465 | WP_372496632.1 | hypothetical protein | - |
| ACCK22_RS06415 (ACCK22_06415) | - | 1247491..1248438 (+) | 948 | WP_001557971.1 | phage tail family protein | - |
| ACCK22_RS06420 (ACCK22_06420) | - | 1248447..1250348 (+) | 1902 | WP_000152717.1 | SGNH/GDSL hydrolase family protein | - |
| ACCK22_RS06425 (ACCK22_06425) | - | 1250363..1252273 (+) | 1911 | WP_372496633.1 | hypothetical protein | - |
| ACCK22_RS06430 (ACCK22_06430) | - | 1252273..1254096 (+) | 1824 | WP_000259606.1 | phage baseplate upper protein | - |
| ACCK22_RS06435 (ACCK22_06435) | - | 1254096..1254473 (+) | 378 | WP_000705902.1 | DUF2977 domain-containing protein | - |
| ACCK22_RS06440 (ACCK22_06440) | - | 1254477..1254650 (+) | 174 | WP_001800921.1 | XkdX family protein | - |
| ACCK22_RS06445 (ACCK22_06445) | - | 1254691..1254990 (+) | 300 | WP_000466767.1 | DUF2951 domain-containing protein | - |
| ACCK22_RS06450 (ACCK22_06450) | - | 1255127..1257019 (+) | 1893 | WP_031863137.1 | glucosaminidase domain-containing protein | - |
| ACCK22_RS06455 (ACCK22_06455) | - | 1257032..1258204 (+) | 1173 | WP_000276624.1 | BppU family phage baseplate upper protein | - |
| ACCK22_RS06460 (ACCK22_06460) | - | 1258210..1258605 (+) | 396 | WP_000398883.1 | hypothetical protein | - |
| ACCK22_RS06465 (ACCK22_06465) | - | 1258662..1259099 (+) | 438 | WP_000354135.1 | phage holin | - |
| ACCK22_RS06470 (ACCK22_06470) | - | 1259080..1260525 (+) | 1446 | WP_001148142.1 | SH3 domain-containing protein | - |
| ACCK22_RS06475 (ACCK22_06475) | - | 1260768..1260920 (+) | 153 | WP_001788502.1 | hypothetical protein | - |
| ACCK22_RS06480 (ACCK22_06480) | - | 1260991..1261101 (+) | 111 | WP_000139423.1 | hypothetical protein | - |
| ACCK22_RS06485 (ACCK22_06485) | - | 1261103..1261288 (+) | 186 | WP_001286805.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17613.47 Da Isoelectric Point: 5.2672
>NTDB_id=1041957 ACCK22_RS06250 WP_064137532.1 1228588..1229058(+) (ssbA) [Staphylococcus aureus strain CUBIST-27]
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINVIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINVIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=1041957 ACCK22_RS06250 WP_064137532.1 1228588..1229058(+) (ssbA) [Staphylococcus aureus strain CUBIST-27]
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGGACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATAAATGTCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCGAAGAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTGA
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGGACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATAAATGTCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCGAAGAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.367 |
100 |
0.628 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.765 |
100 |
0.564 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Vibrio cholerae strain A1552 |
32.044 |
100 |
0.372 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |