Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACD631_RS20360 Genome accession   NZ_CP168061
Coordinates   4803716..4805230 (+) Length   504 a.a.
NCBI ID   WP_252119427.1    Uniprot ID   -
Organism   Alteromonas macleodii strain H4-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4798716..4810230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACD631_RS20345 (ACD631_20345) ilvA 4799044..4800597 (-) 1554 WP_252119425.1 threonine ammonia-lyase, biosynthetic -
  ACD631_RS20350 (ACD631_20350) ilvD 4800597..4802447 (-) 1851 WP_252119426.1 dihydroxy-acid dehydratase -
  ACD631_RS20355 (ACD631_20355) - 4802890..4803507 (+) 618 WP_014951393.1 trimeric intracellular cation channel family protein -
  ACD631_RS20360 (ACD631_20360) comM 4803716..4805230 (+) 1515 WP_252119427.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACD631_RS20365 (ACD631_20365) ilvY 4805251..4806123 (-) 873 WP_252119428.1 HTH-type transcriptional activator IlvY -
  ACD631_RS20370 (ACD631_20370) ilvC 4806281..4807759 (+) 1479 WP_252119429.1 ketol-acid reductoisomerase -
  ACD631_RS20375 (ACD631_20375) - 4808124..4808462 (+) 339 WP_252119430.1 hypothetical protein -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54063.66 Da        Isoelectric Point: 6.3642

>NTDB_id=1041844 ACD631_RS20360 WP_252119427.1 4803716..4805230(+) (comM) [Alteromonas macleodii strain H4-1]
MGMAVVKTFAGQGVAAPEVSVEIHLANGLPAFQLVGMAETSVKEARERVRSALINSGFEFPAKRITVNLAPADIPKFGGR
FDLLIAVGILAASGYISDISLLNIAFVGELALNGEIKPVNGLIPVVMAAANEDIALVYPGDNDVEAALVSHATRYPAFDL
LSVYEHLTGNKKLAKGQPFTSHSSRSASTGWDDIIGQEQAKRALVIAASGAHNLLMVGPPGTGKSLLASRLLSLLPDMSE
EEALEVAAIHSVKGEKLHAERFLTRHLRSPHHTSSAVALTGGGSNPVPGEISLVHNGILFLDELPEFGRKALDVLREPLE
TGDVHLSRASGSATYPANFQLVAAMNPSPTGDIDDNRLTPQQQLNYLNRLSGPLLDRIDIQVEVPRLPDYDLPERANRPD
DSLHATRERVIAARHKQGLRQGKPNGALHAGELADICLLDDADLQFLQAAAKQLNLSMRVFHRTLKVARTIADLEEQNAV
SRAHIAEALGYRALDNLIKQLSAS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=1041844 ACD631_RS20360 WP_252119427.1 4803716..4805230(+) (comM) [Alteromonas macleodii strain H4-1]
ATGGGAATGGCTGTTGTTAAAACCTTTGCAGGGCAGGGCGTGGCAGCGCCAGAGGTAAGTGTAGAGATTCACCTAGCTAA
TGGTTTACCTGCTTTTCAACTGGTCGGCATGGCAGAAACCAGCGTTAAAGAAGCGCGAGAAAGAGTACGCAGCGCCCTGA
TAAACAGTGGTTTTGAGTTTCCCGCAAAACGAATAACCGTCAATTTAGCGCCAGCAGATATTCCCAAGTTTGGCGGGCGG
TTCGACCTTCTCATTGCCGTAGGCATTTTAGCTGCGTCGGGCTACATCTCAGACATTAGCCTACTTAACATTGCCTTTGT
GGGCGAGCTTGCATTAAATGGTGAAATAAAGCCGGTTAACGGGCTTATTCCTGTTGTCATGGCAGCCGCAAATGAAGATA
TTGCGCTCGTATATCCGGGGGATAATGACGTAGAGGCTGCATTGGTTTCTCACGCAACGCGCTATCCCGCTTTCGATTTA
CTGTCTGTTTATGAACACCTTACCGGCAACAAAAAACTCGCCAAAGGCCAGCCGTTTACTTCTCATTCATCACGCAGCGC
TTCAACTGGTTGGGACGATATTATCGGTCAAGAGCAAGCCAAACGAGCGCTTGTTATCGCAGCAAGTGGAGCACACAATT
TACTTATGGTAGGCCCCCCTGGCACAGGTAAAAGCCTGCTCGCCAGCCGATTGCTATCGCTATTACCCGATATGAGCGAG
GAAGAAGCGTTGGAAGTGGCTGCCATTCACTCTGTGAAAGGCGAAAAACTGCATGCAGAGCGTTTTCTAACTCGCCACCT
CCGCTCGCCCCATCATACTAGCTCTGCGGTGGCGCTTACTGGCGGTGGCTCAAACCCTGTACCGGGTGAAATATCGCTGG
TTCATAATGGTATTTTGTTTCTAGACGAACTGCCTGAATTTGGGCGAAAGGCACTGGATGTATTGCGCGAGCCACTTGAA
ACCGGCGACGTGCATTTGTCTCGTGCTTCAGGAAGCGCCACATACCCCGCCAACTTTCAACTAGTAGCGGCGATGAATCC
AAGCCCGACGGGTGATATTGATGATAACCGACTAACCCCGCAGCAACAGCTCAACTACTTGAACCGGTTATCGGGACCAC
TGCTTGATAGAATTGATATACAAGTCGAAGTGCCGCGCCTACCTGACTACGACCTGCCAGAGCGTGCCAATAGACCTGAC
GACTCGTTACACGCAACGCGAGAGCGAGTCATTGCAGCGCGTCACAAACAAGGGCTACGGCAAGGTAAGCCAAATGGTGC
GCTGCACGCAGGTGAGCTTGCCGATATATGCTTGCTAGATGACGCTGACTTGCAGTTTTTACAAGCCGCTGCTAAACAGC
TTAATTTGTCTATGCGGGTGTTTCATCGCACGTTAAAAGTGGCAAGAACCATTGCTGACCTTGAAGAGCAGAACGCTGTA
TCGCGGGCGCACATTGCAGAAGCATTGGGCTATCGCGCCCTCGATAACCTTATTAAACAGTTGAGCGCTAGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-136)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-388)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.059

100

0.542
  comM Vibrio campbellii strain DS40M4

53.069

100

0.532
  comM Haemophilus influenzae Rd KW20

51.181

100

0.516
  comM Glaesserella parasuis strain SC1401

50.988

100

0.512
  comM Legionella pneumophila str. Paris

45.363

98.413

0.446
  comM Legionella pneumophila strain ERS1305867

45.363

98.413

0.446
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.604

100

0.429

Multiple sequence alignment