Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABRP30_RS00870 Genome accession   NZ_CP167996
Coordinates   183790..185280 (-) Length   496 a.a.
NCBI ID   WP_349975890.1    Uniprot ID   -
Organism   Pseudomonas sp. WHRI 8519     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 178790..190280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABRP30_RS00850 (ABRP30_000850) - 179527..181314 (-) 1788 WP_349975889.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  ABRP30_RS00855 (ABRP30_000855) - 181476..181685 (-) 210 Protein_170 helix-turn-helix domain-containing protein -
  ABRP30_RS00860 (ABRP30_000860) - 181863..183170 (-) 1308 WP_267820102.1 Nramp family divalent metal transporter -
  ABRP30_RS00865 (ABRP30_000865) - 183390..183650 (-) 261 WP_267820104.1 DUF2790 domain-containing protein -
  ABRP30_RS00870 (ABRP30_000870) comM 183790..185280 (-) 1491 WP_349975890.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABRP30_RS00875 (ABRP30_000875) - 185506..187533 (+) 2028 WP_349975891.1 DUF4034 domain-containing protein -
  ABRP30_RS00880 (ABRP30_000880) - 187550..187813 (-) 264 WP_241804976.1 accessory factor UbiK family protein -
  ABRP30_RS00885 (ABRP30_000885) glnK 188179..188517 (+) 339 WP_002555808.1 P-II family nitrogen regulator -
  ABRP30_RS00890 (ABRP30_000890) - 188566..189900 (+) 1335 WP_241804977.1 ammonium transporter -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 52986.71 Da        Isoelectric Point: 7.2279

>NTDB_id=1041004 ABRP30_RS00870 WP_349975890.1 183790..185280(-) (comM) [Pseudomonas sp. WHRI 8519]
MSLALVHSRAQVGVQAPAVSVETHLANGLPTLTLVGLPETTVKESKDRVRSAIVNSGLNYPQRRITQNLAPADLPKDGGR
YDLAIALGILAADGQVPVATLTDIECLGELALSGKLRPVQGVLPAALAAREAGRALVVPRENAEEASLAGGLVVYAVGHL
LELVAHLNGQVPLPPFAANGLLLHSRPYPDLSEVQGQVAAKRALLLAASGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVSGHKPLDSWPQRPFRHPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPTGRCRCSTEQIQRYRNKLSGPLLDRIDLHLTVARETTTLNNQPCG
ETSADVAAQVAEAREVQYRRQGCANAFLDLEGLRQHCELCAADQAWLESACERLTLSLRAAHRLLKVARTLADLEGASTI
AKAHLAEALQYRPGSH

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=1041004 ABRP30_RS00870 WP_349975890.1 183790..185280(-) (comM) [Pseudomonas sp. WHRI 8519]
ATGTCCCTTGCCCTCGTCCACAGCCGCGCCCAGGTTGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACTCACCTGGCCAA
CGGGCTGCCCACTCTCACGCTGGTCGGCCTGCCCGAAACCACGGTCAAGGAAAGCAAGGACCGGGTGCGCAGCGCCATCG
TCAACTCCGGGCTGAACTACCCGCAAAGGCGCATCACTCAGAACCTGGCACCGGCAGACCTGCCCAAGGATGGCGGGCGC
TACGACCTGGCCATCGCCCTGGGCATCCTTGCCGCTGACGGTCAGGTGCCGGTGGCCACATTGACCGATATCGAATGCCT
GGGCGAACTGGCGCTGTCTGGCAAGCTGCGCCCGGTTCAGGGCGTGCTGCCTGCGGCACTGGCGGCGCGCGAGGCTGGCC
GGGCATTGGTAGTGCCGCGGGAAAACGCCGAAGAGGCGAGCCTGGCGGGTGGGCTGGTGGTGTACGCGGTGGGGCACCTG
CTGGAACTGGTGGCGCACCTCAACGGCCAGGTACCTCTGCCTCCCTTTGCCGCTAACGGTCTATTGCTGCACAGCCGCCC
CTACCCCGACCTCAGCGAGGTGCAGGGCCAGGTAGCCGCCAAGCGTGCGTTACTGCTGGCCGCTTCAGGTGCTCATAACC
TGCTGTTCACCGGCCCGCCCGGCACGGGCAAGACACTGCTCGCCAGCCGCCTGCCCGGCCTGCTGCCGCCGCTGGATGAA
CATGAAGCGCTGGAAGTGGCAGCCATCCAGTCGGTAAGCGGGCACAAACCCCTCGATAGCTGGCCGCAACGGCCGTTTCG
CCATCCGCACCACTCAGCGTCCGGGCCCGCGCTGGTCGGCGGAGGCAGCCGGCCGCAACCAGGTGAAATCACCTTGGCGC
ACCATGGGGTACTGTTTCTCGATGAATTGCCGGAGTTCGAGCGCCGTGTACTTGAGGTGCTTCGCGAGCCGCTGGAGTCT
GGCGAGATCGTGATTGCCCGGGCACGGGACAAAGTACGCTTTCCGGCGCGCTTCCAACTGGTGGCGGCCATGAACCCCTG
CCCTTGCGGCTACCTGGGCGACCCCACCGGCCGCTGCCGCTGCAGCACCGAACAGATCCAGCGCTACCGCAACAAGCTTT
CCGGCCCGCTACTGGACCGCATCGATCTGCACCTTACCGTGGCGCGTGAAACCACCACGCTCAACAACCAACCTTGCGGC
GAGACAAGCGCCGATGTGGCCGCCCAGGTGGCCGAGGCACGCGAGGTGCAGTACCGGCGGCAAGGCTGTGCCAATGCGTT
TCTGGACCTCGAGGGGCTGCGCCAGCACTGCGAATTGTGCGCTGCCGACCAGGCCTGGCTGGAGAGTGCCTGCGAGCGCC
TGACACTTTCCCTGCGCGCCGCCCACAGGCTGTTGAAGGTGGCCCGCACGCTGGCTGACCTGGAGGGGGCCAGTACGATC
GCCAAGGCGCACCTGGCCGAAGCCCTGCAGTACCGGCCCGGAAGTCACTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.556

99.798

0.554
  comM Vibrio campbellii strain DS40M4

55.221

100

0.554
  comM Haemophilus influenzae Rd KW20

55

100

0.554
  comM Glaesserella parasuis strain SC1401

54.382

100

0.55
  comM Legionella pneumophila str. Paris

49.2

100

0.496
  comM Legionella pneumophila strain ERS1305867

49.2

100

0.496
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.117

100

0.478

Multiple sequence alignment