Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QUE60_RS08310 Genome accession   NZ_AP028142
Coordinates   1651303..1651746 (-) Length   147 a.a.
NCBI ID   WP_108509118.1    Uniprot ID   -
Organism   Polynucleobacter sp. HIN11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1646303..1656746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE60_RS08295 (PHIN11_16070) ilvA 1648016..1649536 (+) 1521 WP_286226724.1 threonine ammonia-lyase, biosynthetic -
  QUE60_RS08300 (PHIN11_16080) - 1649538..1650452 (+) 915 WP_286226725.1 5'-nucleotidase -
  QUE60_RS08305 (PHIN11_16090) queF 1650461..1651300 (+) 840 WP_286226726.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF -
  QUE60_RS08310 (PHIN11_16100) ssb 1651303..1651746 (-) 444 WP_108509118.1 single-stranded DNA-binding protein Machinery gene
  QUE60_RS08315 (PHIN11_16110) - 1651788..1652951 (-) 1164 WP_286226727.1 MFS transporter -
  QUE60_RS08320 (PHIN11_16120) uvrA 1652989..1655901 (+) 2913 WP_286226728.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 16062.87 Da        Isoelectric Point: 5.2957

>NTDB_id=104043 QUE60_RS08310 WP_108509118.1 1651303..1651746(-) (ssb) [Polynucleobacter sp. HIN11]
MASVNKVIIVGNVGRDPETRYMPSGDAVTNISVATSDRYKDKQTGEMKENTEWHRIAFFGKLAEIAGQYLKKGSQVYVEG
RLRTRKWTDQSGQEKYSTEIIADSMQMLGARMAGSGEESSGGRSKPAESSSSPSANALDAMDDDIPF

Nucleotide


Download         Length: 444 bp        

>NTDB_id=104043 QUE60_RS08310 WP_108509118.1 1651303..1651746(-) (ssb) [Polynucleobacter sp. HIN11]
ATGGCTTCAGTCAATAAAGTCATCATCGTTGGTAATGTTGGGCGTGACCCAGAAACTCGGTATATGCCCAGTGGTGACGC
TGTCACCAATATTTCAGTGGCCACTTCAGATCGCTATAAAGATAAGCAAACAGGCGAGATGAAAGAGAATACCGAATGGC
ATCGTATTGCCTTTTTCGGTAAGTTGGCTGAAATTGCGGGTCAATATCTCAAAAAAGGTTCACAGGTTTATGTCGAGGGC
CGCTTGCGGACTCGAAAGTGGACGGATCAAAGTGGACAAGAAAAGTATTCCACCGAGATCATTGCTGACAGCATGCAAAT
GCTCGGTGCGCGAATGGCTGGTTCCGGAGAGGAATCGTCAGGCGGTCGTTCTAAGCCTGCTGAGAGTTCATCTAGTCCAA
GCGCGAACGCACTTGATGCAATGGATGATGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.124

100

0.619
  ssb Glaesserella parasuis strain SC1401

49.444

100

0.605
  ssb Neisseria meningitidis MC58

44.253

100

0.524
  ssb Neisseria gonorrhoeae MS11

43.103

100

0.51
  ssb Latilactobacillus sakei subsp. sakei 23K

30.814

100

0.361

Multiple sequence alignment