Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QUE62_RS08315 Genome accession   NZ_AP028140
Coordinates   1660122..1660565 (-) Length   147 a.a.
NCBI ID   WP_286225286.1    Uniprot ID   -
Organism   Polynucleobacter sp. HIN9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1655122..1665565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE62_RS08300 (PHIN9_16270) ilvA 1656835..1658355 (+) 1521 WP_286223572.1 threonine ammonia-lyase, biosynthetic -
  QUE62_RS08305 (PHIN9_16280) - 1658357..1659271 (+) 915 WP_286261512.1 5'-nucleotidase -
  QUE62_RS08310 (PHIN9_16290) queF 1659280..1660119 (+) 840 WP_286261513.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF -
  QUE62_RS08315 (PHIN9_16300) ssb 1660122..1660565 (-) 444 WP_286225286.1 single-stranded DNA-binding protein Machinery gene
  QUE62_RS08320 (PHIN9_16310) - 1660607..1661770 (-) 1164 WP_286225288.1 MFS transporter -
  QUE62_RS08325 (PHIN9_16320) uvrA 1661808..1664720 (+) 2913 WP_286261515.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 16106.92 Da        Isoelectric Point: 5.2957

>NTDB_id=104022 QUE62_RS08315 WP_286225286.1 1660122..1660565(-) (ssb) [Polynucleobacter sp. HIN9]
MASVNKVIIVGNVGRDPETRYMPSGDAVTNISVATSDRYKDKQTGEMKENTEWHRIAFFGKLAEIAGQYLKKGSQVYVEG
RLRTRKWTDQSGQEKYSTEIIADSMQMLGARMAGSGEESSSGRSKPAESTSSPSANALDAMDDDIPF

Nucleotide


Download         Length: 444 bp        

>NTDB_id=104022 QUE62_RS08315 WP_286225286.1 1660122..1660565(-) (ssb) [Polynucleobacter sp. HIN9]
ATGGCTTCAGTCAATAAAGTCATCATCGTTGGTAATGTTGGGCGTGACCCAGAAACACGGTATATGCCCAGCGGTGACGC
CGTTACTAATATTTCAGTAGCCACTTCAGATCGCTATAAAGATAAGCAAACAGGCGAAATGAAAGAGAACACCGAATGGC
ATCGCATTGCCTTTTTCGGTAAGTTAGCTGAAATTGCGGGTCAATATCTCAAAAAAGGTTCACAGGTTTATGTCGAGGGT
CGCTTGCGGACTCGAAAGTGGACGGATCAAAGTGGACAAGAAAAGTATTCCACTGAGATCATTGCTGACAGCATGCAAAT
GCTCGGCGCTCGAATGGCTGGCTCTGGAGAGGAATCATCAAGCGGTCGTTCTAAGCCTGCTGAGAGCACATCGAGTCCAA
GCGCAAATGCACTTGATGCAATGGATGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.562

100

0.612
  ssb Glaesserella parasuis strain SC1401

48.333

100

0.592
  ssb Neisseria meningitidis MC58

43.103

100

0.51
  ssb Neisseria gonorrhoeae MS11

42.529

100

0.503
  ssb Latilactobacillus sakei subsp. sakei 23K

30.814

100

0.361

Multiple sequence alignment