Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | AB8613_RS06895 | Genome accession | NZ_CP167894 |
| Coordinates | 1545850..1546407 (-) | Length | 185 a.a. |
| NCBI ID | WP_017061342.1 | Uniprot ID | - |
| Organism | Vibrio sp. BS-M-Sm-2 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1540850..1551407
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB8613_RS06875 (AB8613_06875) | - | 1541253..1541588 (-) | 336 | WP_285955113.1 | MSHA biogenesis protein MshK | - |
| AB8613_RS06880 (AB8613_06880) | pilO | 1541581..1542228 (-) | 648 | WP_285955112.1 | type 4a pilus biogenesis protein PilO | - |
| AB8613_RS06885 (AB8613_06885) | - | 1542228..1543670 (-) | 1443 | WP_327784260.1 | MSHA biogenesis protein MshI | - |
| AB8613_RS06890 (AB8613_06890) | csrD | 1543673..1545688 (-) | 2016 | WP_327784261.1 | RNase E specificity factor CsrD | - |
| AB8613_RS06895 (AB8613_06895) | ssb | 1545850..1546407 (-) | 558 | WP_017061342.1 | single-stranded DNA-binding protein | Machinery gene |
| AB8613_RS06900 (AB8613_06900) | qstR | 1546686..1547333 (+) | 648 | WP_060982966.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| AB8613_RS06905 (AB8613_06905) | galU | 1547491..1548363 (+) | 873 | WP_061019114.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| AB8613_RS06910 (AB8613_06910) | uvrA | 1548514..1551345 (+) | 2832 | WP_102478994.1 | excinuclease ABC subunit UvrA | - |
Sequence
Protein
Download Length: 185 a.a. Molecular weight: 20400.52 Da Isoelectric Point: 5.2358
>NTDB_id=1040109 AB8613_RS06895 WP_017061342.1 1545850..1546407(-) (ssb) [Vibrio sp. BS-M-Sm-2]
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGNNQQQGGWGQPQQPQQQQQQYSAPAQQQPKA
PQQAPQQAQPQYNEPPMDFDDDIPF
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGNNQQQGGWGQPQQPQQQQQQYSAPAQQQPKA
PQQAPQQAQPQYNEPPMDFDDDIPF
Nucleotide
Download Length: 558 bp
>NTDB_id=1040109 AB8613_RS06895 WP_017061342.1 1545850..1546407(-) (ssb) [Vibrio sp. BS-M-Sm-2]
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCTGAAATTCGTTACATGCCAAATGG
CGGCGCAGTAGCGAACATTACCATTGCAACGTCAGAGTCATGGCGTGATAAAGCAACTGGCGAGCAGCGCGAAAAAACAG
AATGGCACCGTGTTGCTCTGTTTGGCAAGCTTGCGGAAGTTGCTGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACATT
GAAGGTCAACTTCAAACGCGCAAATGGCAAGATCAAAGCGGTCAAGATCGCTACACAACTGAAGTGGTTGTTCAAGGCTT
CAATGGTGTGATGCAAATGCTTGGCGGCCGTGCTCAAGGCGGTGCTCCTGCTCAAGGTGGCATGGGTAACAACCAACAGC
AAGGTGGTTGGGGTCAGCCACAGCAGCCACAACAACAGCAACAACAATACAGTGCTCCAGCTCAACAGCAGCCGAAAGCA
CCTCAACAAGCTCCTCAGCAGGCTCAACCTCAATATAATGAGCCGCCAATGGATTTTGATGATGACATCCCATTTTAA
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCTGAAATTCGTTACATGCCAAATGG
CGGCGCAGTAGCGAACATTACCATTGCAACGTCAGAGTCATGGCGTGATAAAGCAACTGGCGAGCAGCGCGAAAAAACAG
AATGGCACCGTGTTGCTCTGTTTGGCAAGCTTGCGGAAGTTGCTGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACATT
GAAGGTCAACTTCAAACGCGCAAATGGCAAGATCAAAGCGGTCAAGATCGCTACACAACTGAAGTGGTTGTTCAAGGCTT
CAATGGTGTGATGCAAATGCTTGGCGGCCGTGCTCAAGGCGGTGCTCCTGCTCAAGGTGGCATGGGTAACAACCAACAGC
AAGGTGGTTGGGGTCAGCCACAGCAGCCACAACAACAGCAACAACAATACAGTGCTCCAGCTCAACAGCAGCCGAAAGCA
CCTCAACAAGCTCCTCAGCAGGCTCAACCTCAATATAATGAGCCGCCAATGGATTTTGATGATGACATCCCATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
81.72 |
100 |
0.822 |
| ssb | Glaesserella parasuis strain SC1401 |
57.447 |
100 |
0.584 |
| ssb | Neisseria meningitidis MC58 |
47.568 |
100 |
0.476 |
| ssb | Neisseria gonorrhoeae MS11 |
47.568 |
100 |
0.476 |