Detailed information
Bioinformatically predicted
Overview
| Name | qstR | Type | Regulator |
| Locus tag | AB8613_RS06900 | Genome accession | NZ_CP167894 |
| Coordinates | 1546686..1547333 (+) | Length | 215 a.a. |
| NCBI ID | WP_060982966.1 | Uniprot ID | - |
| Organism | Vibrio sp. BS-M-Sm-2 | ||
| Function | promote expression of competence genes (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1541686..1552333
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB8613_RS06885 (AB8613_06885) | - | 1542228..1543670 (-) | 1443 | WP_327784260.1 | MSHA biogenesis protein MshI | - |
| AB8613_RS06890 (AB8613_06890) | csrD | 1543673..1545688 (-) | 2016 | WP_327784261.1 | RNase E specificity factor CsrD | - |
| AB8613_RS06895 (AB8613_06895) | ssb | 1545850..1546407 (-) | 558 | WP_017061342.1 | single-stranded DNA-binding protein | Machinery gene |
| AB8613_RS06900 (AB8613_06900) | qstR | 1546686..1547333 (+) | 648 | WP_060982966.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| AB8613_RS06905 (AB8613_06905) | galU | 1547491..1548363 (+) | 873 | WP_061019114.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| AB8613_RS06910 (AB8613_06910) | uvrA | 1548514..1551345 (+) | 2832 | WP_102478994.1 | excinuclease ABC subunit UvrA | - |
Sequence
Protein
Download Length: 215 a.a. Molecular weight: 25185.32 Da Isoelectric Point: 9.2504
>NTDB_id=1040110 AB8613_RS06900 WP_060982966.1 1546686..1547333(+) (qstR) [Vibrio sp. BS-M-Sm-2]
MRKSRYARTLHFMCIDPSDTYLHVKEIEKHLSIILYKMTPDDLMLVDRKQSNRILLVDYREVPQLLIICPNLTVMWKNHE
IILFNVPQQLPTSELLTYGVLKGLFYNTEQKDKIARGLQEVIDGDNWLPRKVTNQLLFYYRNMVNTNTTPTNVDLTIREI
QVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQNLLA
MRKSRYARTLHFMCIDPSDTYLHVKEIEKHLSIILYKMTPDDLMLVDRKQSNRILLVDYREVPQLLIICPNLTVMWKNHE
IILFNVPQQLPTSELLTYGVLKGLFYNTEQKDKIARGLQEVIDGDNWLPRKVTNQLLFYYRNMVNTNTTPTNVDLTIREI
QVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQNLLA
Nucleotide
Download Length: 648 bp
>NTDB_id=1040110 AB8613_RS06900 WP_060982966.1 1546686..1547333(+) (qstR) [Vibrio sp. BS-M-Sm-2]
ATGAGAAAGTCTCGATATGCTCGCACTTTACACTTTATGTGCATCGATCCAAGCGACACCTACCTACACGTAAAAGAGAT
AGAAAAGCACTTATCTATTATCCTTTATAAGATGACACCGGACGATTTAATGCTTGTTGATAGAAAACAGAGTAACCGAA
TCTTGCTCGTCGATTACAGAGAGGTACCACAACTACTGATTATTTGCCCTAACCTGACTGTTATGTGGAAAAATCACGAA
ATCATTTTATTCAATGTACCCCAGCAACTTCCAACCTCAGAGCTGCTTACCTATGGGGTACTAAAAGGACTCTTTTACAA
CACTGAACAAAAGGACAAGATTGCTCGTGGTCTTCAAGAAGTCATTGATGGCGATAACTGGCTGCCAAGGAAGGTAACCA
ATCAACTGTTGTTTTATTATCGTAATATGGTCAATACCAACACGACACCAACCAATGTTGATTTAACCATTCGTGAGATC
CAAGTGATTCGCTGCCTTCAATCAGGGTCATCAAACACACAAATCGCCGATGACTTGTTTATTAGTGAGTTCACGGTTAA
ATCTCACCTTTATCAAATATTCCGGAAGTTGGCAGTCAAAAATAGGGTTCAAGCCATTGCTTGGGCAAACCAGAACCTAC
TTGCATAA
ATGAGAAAGTCTCGATATGCTCGCACTTTACACTTTATGTGCATCGATCCAAGCGACACCTACCTACACGTAAAAGAGAT
AGAAAAGCACTTATCTATTATCCTTTATAAGATGACACCGGACGATTTAATGCTTGTTGATAGAAAACAGAGTAACCGAA
TCTTGCTCGTCGATTACAGAGAGGTACCACAACTACTGATTATTTGCCCTAACCTGACTGTTATGTGGAAAAATCACGAA
ATCATTTTATTCAATGTACCCCAGCAACTTCCAACCTCAGAGCTGCTTACCTATGGGGTACTAAAAGGACTCTTTTACAA
CACTGAACAAAAGGACAAGATTGCTCGTGGTCTTCAAGAAGTCATTGATGGCGATAACTGGCTGCCAAGGAAGGTAACCA
ATCAACTGTTGTTTTATTATCGTAATATGGTCAATACCAACACGACACCAACCAATGTTGATTTAACCATTCGTGAGATC
CAAGTGATTCGCTGCCTTCAATCAGGGTCATCAAACACACAAATCGCCGATGACTTGTTTATTAGTGAGTTCACGGTTAA
ATCTCACCTTTATCAAATATTCCGGAAGTTGGCAGTCAAAAATAGGGTTCAAGCCATTGCTTGGGCAAACCAGAACCTAC
TTGCATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| qstR | Vibrio campbellii strain DS40M4 |
53.023 |
100 |
0.53 |
| qstR | Vibrio parahaemolyticus RIMD 2210633 |
52.558 |
100 |
0.526 |
| qstR | Vibrio cholerae strain A1552 |
48.131 |
99.535 |
0.479 |