Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QUE64_RS08280 Genome accession   NZ_AP028138
Coordinates   1649189..1649632 (-) Length   147 a.a.
NCBI ID   WP_286225286.1    Uniprot ID   -
Organism   Polynucleobacter sp. HIN7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1644189..1654632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE64_RS08265 (PHIN7_16280) ilvA 1645902..1647422 (+) 1521 WP_286225282.1 threonine ammonia-lyase, biosynthetic -
  QUE64_RS08270 (PHIN7_16290) - 1647424..1648338 (+) 915 WP_286223573.1 5'-nucleotidase -
  QUE64_RS08275 (PHIN7_16300) queF 1648347..1649186 (+) 840 WP_286225283.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF -
  QUE64_RS08280 (PHIN7_16310) ssb 1649189..1649632 (-) 444 WP_286225286.1 single-stranded DNA-binding protein Machinery gene
  QUE64_RS08285 (PHIN7_16320) - 1649674..1650837 (-) 1164 WP_286225288.1 MFS transporter -
  QUE64_RS08290 (PHIN7_16330) uvrA 1650875..1653787 (+) 2913 WP_286225289.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 16106.92 Da        Isoelectric Point: 5.2957

>NTDB_id=104001 QUE64_RS08280 WP_286225286.1 1649189..1649632(-) (ssb) [Polynucleobacter sp. HIN7]
MASVNKVIIVGNVGRDPETRYMPSGDAVTNISVATSDRYKDKQTGEMKENTEWHRIAFFGKLAEIAGQYLKKGSQVYVEG
RLRTRKWTDQSGQEKYSTEIIADSMQMLGARMAGSGEESSSGRSKPAESTSSPSANALDAMDDDIPF

Nucleotide


Download         Length: 444 bp        

>NTDB_id=104001 QUE64_RS08280 WP_286225286.1 1649189..1649632(-) (ssb) [Polynucleobacter sp. HIN7]
ATGGCTTCAGTCAATAAAGTCATCATCGTTGGTAATGTTGGGCGTGACCCAGAAACACGGTATATGCCCAGCGGTGACGC
CGTCACTAATATTTCAGTAGCCACTTCAGATCGCTATAAAGATAAGCAAACAGGCGAAATGAAAGAGAACACCGAATGGC
ATCGCATTGCCTTTTTCGGTAAGTTAGCTGAAATTGCGGGTCAATATCTAAAAAAAGGTTCACAGGTTTATGTCGAGGGT
CGCTTGCGGACTCGAAAGTGGACGGATCAAAGTGGACAAGAAAAGTATTCCACTGAGATCATTGCTGACAGCATGCAAAT
GCTCGGCGCTCGAATGGCTGGCTCTGGAGAGGAATCATCAAGCGGTCGTTCTAAGCCTGCTGAGAGCACATCGAGTCCAA
GCGCAAATGCACTTGATGCAATGGATGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.562

100

0.612
  ssb Glaesserella parasuis strain SC1401

48.333

100

0.592
  ssb Neisseria meningitidis MC58

43.103

100

0.51
  ssb Neisseria gonorrhoeae MS11

42.529

100

0.503
  ssb Latilactobacillus sakei subsp. sakei 23K

30.814

100

0.361

Multiple sequence alignment