Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACCQ12_RS18660 Genome accession   NZ_CP167863
Coordinates   4404720..4406240 (+) Length   506 a.a.
NCBI ID   WP_372382444.1    Uniprot ID   -
Organism   Xanthomonas sp. NCPPB 1068     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4399720..4411240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCQ12_RS18640 (ACCQ12_18640) - 4400585..4401241 (+) 657 WP_372382442.1 RIO1 family regulatory kinase/ATPase -
  ACCQ12_RS18645 (ACCQ12_18645) - 4401464..4403437 (-) 1974 WP_372382443.1 beta-N-acetylglucosaminidase domain-containing protein -
  ACCQ12_RS18650 (ACCQ12_18650) - 4403892..4404266 (-) 375 WP_199680230.1 P-II family nitrogen regulator -
  ACCQ12_RS18655 (ACCQ12_18655) - 4404420..4404704 (+) 285 WP_039411142.1 accessory factor UbiK family protein -
  ACCQ12_RS18660 (ACCQ12_18660) comM 4404720..4406240 (+) 1521 WP_372382444.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACCQ12_RS18665 (ACCQ12_18665) - 4406460..4406969 (+) 510 WP_039411161.1 lipocalin family protein -
  ACCQ12_RS18670 (ACCQ12_18670) - 4407387..4407563 (-) 177 WP_372382445.1 hypothetical protein -
  ACCQ12_RS18675 (ACCQ12_18675) - 4407946..4409517 (+) 1572 WP_166750695.1 EAL domain-containing protein -
  ACCQ12_RS18680 (ACCQ12_18680) - 4409917..4411038 (-) 1122 WP_372382446.1 fatty acid desaturase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53816.64 Da        Isoelectric Point: 8.9199

>NTDB_id=1039979 ACCQ12_RS18660 WP_372382444.1 4404720..4406240(+) (comM) [Xanthomonas sp. NCPPB 1068]
MSLALVHSRARVGVQAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKDGGR
FDLPIALGILAASGQIDRQALAEYEFLGELALTGELRGVDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVQAFTARTL
LEVCAALNGTQQAPAAALAVATLGTAALPDMADVRGQPHARRALEIAAAGGHHLLLMGSPGCGKTLLASRLPGLLPDASD
AEALETAAIRSISGRGLDLARWRQRPYRSPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGLVTISRAARSVDFPARFQLVAAMNPCPCGWAGDGSGRCRCSSDSIRRYRSRISGPLLDRIDLHVDVPRLPPQALRSGN
PGEDSASVRARVVAARQRQLARGPLPNARLDQPDTDRHCRLHGDDQLLLERAIEHLQLSARSMHRILRVARTIADLDDSA
VIATRHLTEAIGYRKLDRALAPASAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1039979 ACCQ12_RS18660 WP_372382444.1 4404720..4406240(+) (comM) [Xanthomonas sp. NCPPB 1068]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTAGGGGTGCAAGCGCCCGAGGTCCGGGTGGAAGTGCATCTCTCCGG
GGGTCTCCCCTCCACCCAGATCGTGGGCCTGCCCGAGGCGGCGGTGCGCGAATCGCGCGAACGCGTGCGTGCGGCCCTGC
TGTGTGCCCAGTTTGAATTCCCGGCGCGGCGCATCACCATCAACCTGGCGCCAGCGGATCTGCCCAAGGACGGCGGTCGC
TTCGATCTGCCGATTGCGCTTGGCATCCTGGCTGCCAGCGGGCAGATCGACCGGCAGGCGCTGGCCGAGTACGAATTCCT
AGGCGAGCTGGCGCTGACCGGCGAGTTGCGCGGCGTCGACGGCGTGTTACCGGCGGCCCTGGCGGCCGCGCAGGCCGGGC
GGCGGCTGATCGTGCCGCTGGCCAATGGCGCCGAGGCCGCCATTGCCGGGCATGTCCAGGCCTTTACCGCACGTACCCTG
CTGGAGGTATGCGCCGCGCTCAACGGCACCCAGCAGGCACCAGCCGCCGCGCTGGCGGTGGCCACCCTGGGCACAGCGGC
CCTGCCCGACATGGCCGATGTGCGCGGCCAACCGCACGCACGCCGCGCACTGGAGATCGCCGCCGCGGGGGGCCACCACT
TGCTGCTGATGGGCAGCCCCGGATGCGGCAAGACCCTGCTCGCCTCGCGCCTGCCCGGCCTGCTGCCGGATGCCAGCGAT
GCCGAGGCGCTGGAAACCGCCGCCATCCGCTCCATCAGCGGGCGCGGGCTGGATCTGGCGCGCTGGCGGCAGCGGCCCTA
CCGATCCCCGCACCACACCGCCAGTGCGGTCGCCCTGGTCGGTGGTGGCACGCATCCGCGCCCCGGCGAGATCTCGCTGG
CCCATAACGGCGTGTTGTTTCTGGACGAGCTGCCCGAGTGGCAACGACAGACGCTCGAGGTCCTGCGCGAGCCGCTGGAA
TCGGGGCTGGTCACGATCTCGCGGGCAGCGCGCAGCGTGGATTTCCCGGCACGGTTCCAGCTGGTTGCCGCCATGAACCC
GTGCCCGTGCGGCTGGGCCGGCGATGGCAGCGGGCGCTGTCGCTGCAGCAGCGACAGCATCCGCCGGTATCGCAGCCGCA
TCTCCGGGCCGCTGCTGGACCGCATCGACCTGCATGTCGATGTACCGCGCCTGCCGCCGCAAGCGCTGCGCAGTGGCAAC
CCGGGCGAGGACAGCGCCAGCGTGCGTGCACGCGTGGTCGCCGCGCGGCAGCGCCAGCTTGCGCGCGGCCCGCTGCCCAA
CGCACGCCTCGACCAGCCGGACACCGATCGCCACTGCCGCCTGCACGGCGACGACCAATTGCTGCTGGAGCGGGCGATCG
AGCACCTGCAACTGTCCGCACGCTCGATGCACCGCATCCTGCGCGTGGCGCGTACCATCGCCGACCTGGACGACAGTGCC
GTCATCGCCACGCGCCACCTGACCGAAGCCATCGGCTATCGCAAGCTCGATCGCGCGCTTGCCCCTGCCAGCGCGGCCTA
G

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.522

100

0.565
  comM Haemophilus influenzae Rd KW20

54.403

100

0.549
  comM Vibrio campbellii strain DS40M4

54.348

100

0.543
  comM Glaesserella parasuis strain SC1401

54.15

100

0.542
  comM Legionella pneumophila str. Paris

52.008

98.419

0.512
  comM Legionella pneumophila strain ERS1305867

52.008

98.419

0.512
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.472

100

0.457

Multiple sequence alignment