Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   ACCQ12_RS14935 Genome accession   NZ_CP167863
Coordinates   3544735..3544854 (-) Length   39 a.a.
NCBI ID   WP_104579922.1    Uniprot ID   -
Organism   Xanthomonas sp. NCPPB 1068     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3539735..3549854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCQ12_RS14925 (ACCQ12_14925) - 3540752..3542365 (+) 1614 WP_047695066.1 PAS domain-containing sensor histidine kinase -
  ACCQ12_RS14930 (ACCQ12_14930) pilR 3542916..3544310 (+) 1395 WP_372382090.1 sigma-54-dependent transcriptional regulator Regulator
  ACCQ12_RS14935 (ACCQ12_14935) pilB 3544735..3544854 (-) 120 WP_104579922.1 pilus assembly protein Machinery gene
  ACCQ12_RS14940 (ACCQ12_14940) pilB 3545103..3546839 (-) 1737 WP_372382091.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACCQ12_RS14945 (ACCQ12_14945) galE 3546952..3547929 (-) 978 WP_372382092.1 UDP-glucose 4-epimerase GalE -
  ACCQ12_RS14950 (ACCQ12_14950) - 3548539..3549033 (+) 495 WP_372382093.1 class I SAM-dependent methyltransferase -
  ACCQ12_RS14955 (ACCQ12_14955) - 3549037..3549414 (-) 378 WP_372382094.1 EamA family transporter -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4253.91 Da        Isoelectric Point: 10.4810

>NTDB_id=1039972 ACCQ12_RS14935 WP_104579922.1 3544735..3544854(-) (pilB) [Xanthomonas sp. NCPPB 1068]
MQSVEASQKIGIRDLRQSALMKAAHGVTSLAEINRVTKD

Nucleotide


Download         Length: 120 bp        

>NTDB_id=1039972 ACCQ12_RS14935 WP_104579922.1 3544735..3544854(-) (pilB) [Xanthomonas sp. NCPPB 1068]
ATGCAGAGTGTCGAGGCGTCGCAGAAGATCGGTATCCGCGATCTGCGGCAGTCGGCGTTGATGAAGGCTGCGCACGGGGT
GACCAGCTTGGCTGAGATCAATCGAGTGACCAAGGACTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Acinetobacter baumannii D1279779

55.882

87.179

0.487
  pilB Acinetobacter baylyi ADP1

51.515

84.615

0.436

Multiple sequence alignment