Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACCQ12_RS14930 Genome accession   NZ_CP167863
Coordinates   3542916..3544310 (+) Length   464 a.a.
NCBI ID   WP_372382090.1    Uniprot ID   -
Organism   Xanthomonas sp. NCPPB 1068     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3537916..3549310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCQ12_RS14915 (ACCQ12_14915) sucD 3538450..3539325 (-) 876 WP_005921370.1 succinate--CoA ligase subunit alpha -
  ACCQ12_RS14920 (ACCQ12_14920) sucC 3539350..3540519 (-) 1170 WP_039405518.1 ADP-forming succinate--CoA ligase subunit beta -
  ACCQ12_RS14925 (ACCQ12_14925) - 3540752..3542365 (+) 1614 WP_047695066.1 PAS domain-containing sensor histidine kinase -
  ACCQ12_RS14930 (ACCQ12_14930) pilR 3542916..3544310 (+) 1395 WP_372382090.1 sigma-54-dependent transcriptional regulator Regulator
  ACCQ12_RS14935 (ACCQ12_14935) pilB 3544735..3544854 (-) 120 WP_104579922.1 pilus assembly protein Machinery gene
  ACCQ12_RS14940 (ACCQ12_14940) pilB 3545103..3546839 (-) 1737 WP_372382091.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACCQ12_RS14945 (ACCQ12_14945) galE 3546952..3547929 (-) 978 WP_372382092.1 UDP-glucose 4-epimerase GalE -
  ACCQ12_RS14950 (ACCQ12_14950) - 3548539..3549033 (+) 495 WP_372382093.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50248.57 Da        Isoelectric Point: 6.5100

>NTDB_id=1039971 ACCQ12_RS14930 WP_372382090.1 3542916..3544310(+) (pilR) [Xanthomonas sp. NCPPB 1068]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIARYHPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPTPPPPPPEQASRLLGDSTAMESLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASSETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTPSALDALDQYGFPGNVRELENILERALALAEDDQISASDLRLPAHGGHRHAAAPGSAA
VEPREAVHDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=1039971 ACCQ12_RS14930 WP_372382090.1 3542916..3544310(+) (pilR) [Xanthomonas sp. NCPPB 1068]
ATGAACGAACCCAAAAGCGCCCTGGTTGTCGATGACGAGCGAGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCAT
GGGCCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCGCGCGAGTTACTGGCCAACAACCCGTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATCGAACTGGTCACCGAAATCGCCAGGTACCACCCGCAGACCCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCCGTGGAAGCGCTGAAGGCCGGCGCCTTCGACTTCGTGAGCAAGCCGGT
GGACATCGGCGTGTTGCGTGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCCACCCCGCCACCGCCGC
CACCGGAACAGGCCAGCCGCTTGCTGGGCGATTCGACCGCGATGGAAAGCCTGCGCGCCACCATCGGCAAGGTGGCGCGC
AGCCAGGCGCCGGTCTATATCGTCGGCGAATCGGGCGTGGGCAAGGAGCTGGTGGCGCGCACCATCCACGAGCAGGGCGC
GCGCGCGGCCGGCCCCTTCGTGCCGGTCAATTGCGGCGCGATCCCGGCCGAATTGATGGAAAGCGAGTTCTTCGGCCACA
AGAAAGGCAGCTTCACCGGCGCACATGCCGACAAGCCGGGCCTGTTCCAGGCCGCACACGGCGGTACGCTGTTCCTGGAC
GAAGTGGCCGAGCTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAGTCGGTGCGCCCGGTCGGCGC
GTCGAGCGAAACCCTGGTGGACGTCCGCATCCTGTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TCCGTCACGACCTGTACTACCGCATCAACGTGATCGAACTGCGCGTCCCGCCGCTGCGCGAACGCGGTGGCGACCTGCCG
CAACTGGCCGCTGCCATCATCGCCCGGCTGGCGCACAGCCATGGCCGCCCGATCCCGCTTCTGACGCCCTCGGCGCTCGA
CGCGCTGGACCAGTACGGCTTCCCCGGCAACGTGCGCGAGCTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAGG
ACGACCAGATCAGCGCCAGCGACCTGCGCCTGCCCGCCCACGGCGGCCACCGCCACGCCGCCGCCCCCGGCAGCGCCGCG
GTCGAACCGCGCGAAGCCGTCCACGACATCGACCCGGCGTCCGCCGCACTGCCCTCCTATATCGAGCAGCTGGAGCGCGC
CGCGATCCAGAAAGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACTGCCGCGCAGCTGGGTATCACGTTTCGGGCGT
TGCGTTACAAGTTGAAGAAGTTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Response regulator receiver domain (Response_reg)

(8-114)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.931

99.784

0.638
  pilR Acinetobacter baumannii strain A118

49.353

100

0.494

Multiple sequence alignment