Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACCQ10_RS18940 Genome accession   NZ_CP167862
Coordinates   4466444..4467964 (+) Length   506 a.a.
NCBI ID   WP_039411144.1    Uniprot ID   -
Organism   Xanthomonas sp. NCPPB 1325     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4461444..4472964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCQ10_RS18920 (ACCQ10_18920) - 4462312..4462968 (+) 657 WP_372361570.1 RIO1 family regulatory kinase/ATPase -
  ACCQ10_RS18925 (ACCQ10_18925) - 4463188..4465161 (-) 1974 WP_372361571.1 beta-N-acetylglucosaminidase domain-containing protein -
  ACCQ10_RS18930 (ACCQ10_18930) - 4465616..4465990 (-) 375 WP_199680230.1 P-II family nitrogen regulator -
  ACCQ10_RS18935 (ACCQ10_18935) - 4466144..4466428 (+) 285 WP_039411142.1 accessory factor UbiK family protein -
  ACCQ10_RS18940 (ACCQ10_18940) comM 4466444..4467964 (+) 1521 WP_039411144.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACCQ10_RS18945 (ACCQ10_18945) - 4468164..4468673 (+) 510 WP_166744882.1 lipocalin family protein -
  ACCQ10_RS18950 (ACCQ10_18950) - 4469093..4469269 (-) 177 WP_068835690.1 hypothetical protein -
  ACCQ10_RS18955 (ACCQ10_18955) - 4469653..4471224 (+) 1572 WP_372361572.1 EAL domain-containing protein -
  ACCQ10_RS18960 (ACCQ10_18960) - 4471624..4472745 (-) 1122 WP_123137646.1 acyl-CoA desaturase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53920.70 Da        Isoelectric Point: 8.7136

>NTDB_id=1039961 ACCQ10_RS18940 WP_039411144.1 4466444..4467964(+) (comM) [Xanthomonas sp. NCPPB 1325]
MSLALVHSRARVGVQAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKDGGR
FDLPIALGILAASGQIDRQALADYEFLGELALTGELRGVDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVQAFTARTL
LEVCATLNGTQQAPAAALAVATLDTAALPDMADVRGQPHARRALEIAAAGSHHLLLMGSPGCGKTLLASRLPGLLPDASD
AEALETAAIRSISGRGLDLARWRQRPYRSPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGLVTISRAARSVDFPARFQLVAAMNPCPCGWAGDGSGRCRCSSDSIRRYRSRISGPLLDRIDLHVDVPRLPPQALRSGN
PGEDSASVRARVVAARQRQLARGPLPNARLDQPDTDRHCRLHGDDQLLLERAIEHLQLSARSMHRILRVARTIADLDDSA
VIATRHLTEAIGYRKLDRALAPASAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1039961 ACCQ10_RS18940 WP_039411144.1 4466444..4467964(+) (comM) [Xanthomonas sp. NCPPB 1325]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTAGGGGTGCAAGCGCCCGAGGTCCGGGTGGAAGTGCATCTCTCCGG
GGGTCTCCCCTCCACCCAGATCGTGGGCCTGCCCGAGGCGGCGGTGCGCGAATCGCGCGAACGCGTGCGTGCGGCCCTGC
TGTGTGCGCAGTTTGAATTCCCGGCGCGGCGCATCACCATCAACCTGGCGCCAGCGGATCTGCCCAAGGACGGCGGTCGC
TTCGATCTGCCAATCGCACTCGGCATCCTGGCTGCCAGCGGGCAGATCGACCGGCAGGCGCTGGCCGACTACGAATTCCT
CGGCGAGCTGGCGCTGACCGGCGAGTTGCGCGGCGTCGACGGCGTGCTGCCGGCGGCCCTGGCGGCCGCGCAGGCCGGGC
GGCGGCTGATCGTGCCGCTGGCCAATGGCGCCGAAGCCGCCATTGCCGGGCATGTCCAGGCCTTTACCGCACGCACCCTG
CTGGAGGTGTGCGCCACGCTCAACGGCACCCAGCAGGCACCAGCCGCCGCGCTGGCGGTGGCCACCCTGGACACAGCGGC
CCTGCCCGACATGGCGGATGTGCGTGGCCAACCGCACGCACGCCGCGCACTGGAGATCGCCGCCGCAGGGAGCCACCACT
TGCTGCTGATGGGCAGCCCCGGATGCGGCAAGACCCTGCTCGCCTCGCGCCTGCCCGGCCTGCTGCCGGACGCCAGCGAT
GCCGAGGCGTTGGAAACCGCCGCCATCCGCTCCATCAGCGGGCGCGGGCTGGATCTGGCGCGCTGGCGGCAGCGGCCCTA
CCGATCCCCCCATCACACCGCCAGTGCGGTCGCCCTGGTCGGTGGTGGCACGCACCCGCGCCCCGGCGAGATCTCGCTGG
CCCACAACGGCGTGTTGTTTCTGGACGAGCTGCCCGAGTGGCAACGACAGACGCTCGAGGTCCTGCGCGAGCCGCTGGAA
TCGGGGCTGGTCACGATCTCGCGGGCAGCGCGCAGCGTGGATTTCCCGGCACGGTTCCAGCTGGTTGCCGCCATGAACCC
GTGCCCGTGCGGCTGGGCCGGCGATGGCAGCGGGCGCTGTCGCTGCAGCAGCGACAGCATCCGCCGGTATCGCAGCCGCA
TCTCCGGGCCGCTGCTGGACCGCATTGATCTGCATGTCGACGTACCGCGCCTGCCACCGCAAGCGCTGCGCAGTGGCAAC
CCGGGCGAGGACAGCGCCAGCGTGCGTGCACGCGTGGTCGCCGCGCGGCAGCGCCAGCTTGCGCGCGGCCCGCTGCCCAA
CGCACGCCTCGACCAGCCAGACACCGATCGCCACTGCCGCCTGCACGGCGACGACCAATTGCTGCTGGAGCGCGCGATCG
AGCACCTGCAACTGTCCGCACGCTCGATGCACCGCATCCTGCGCGTGGCGCGCACCATCGCCGACCTGGACGACAGTGCC
GTCATCGCCACGCGCCACCTGACCGAAGCCATCGGCTATCGCAAGCTCGATCGCGCGCTTGCCCCTGCCAGCGCGGCCTA
G

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.522

100

0.565
  comM Haemophilus influenzae Rd KW20

53.922

100

0.543
  comM Vibrio campbellii strain DS40M4

54.348

100

0.543
  comM Glaesserella parasuis strain SC1401

54.15

100

0.542
  comM Legionella pneumophila str. Paris

51.807

98.419

0.51
  comM Legionella pneumophila strain ERS1305867

51.807

98.419

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.276

100

0.455

Multiple sequence alignment