Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACCQ14_RS18680 Genome accession   NZ_CP167853
Coordinates   4401749..4403269 (+) Length   506 a.a.
NCBI ID   WP_184381526.1    Uniprot ID   -
Organism   Xanthomonas sp. NCPPB 2865     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4396749..4408269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCQ14_RS18660 (ACCQ14_18660) - 4397463..4398137 (+) 675 WP_046344826.1 RIO1 family regulatory kinase/ATPase -
  ACCQ14_RS18665 (ACCQ14_18665) - 4398490..4400472 (-) 1983 WP_372358593.1 beta-N-acetylglucosaminidase domain-containing protein -
  ACCQ14_RS18670 (ACCQ14_18670) - 4400925..4401263 (-) 339 WP_016904463.1 P-II family nitrogen regulator -
  ACCQ14_RS18675 (ACCQ14_18675) - 4401455..4401733 (+) 279 WP_039524822.1 accessory factor UbiK family protein -
  ACCQ14_RS18680 (ACCQ14_18680) comM 4401749..4403269 (+) 1521 WP_184381526.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACCQ14_RS18685 (ACCQ14_18685) - 4403551..4404060 (+) 510 WP_046344852.1 lipocalin family protein -
  ACCQ14_RS18690 (ACCQ14_18690) - 4404684..4404860 (-) 177 WP_046344854.1 hypothetical protein -
  ACCQ14_RS18695 (ACCQ14_18695) - 4405244..4406803 (+) 1560 WP_102582067.1 EAL domain-containing protein -
  ACCQ14_RS18700 (ACCQ14_18700) - 4407119..4408243 (-) 1125 WP_024939708.1 acyl-CoA desaturase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53796.43 Da        Isoelectric Point: 7.9616

>NTDB_id=1039872 ACCQ14_RS18680 WP_184381526.1 4401749..4403269(+) (comM) [Xanthomonas sp. NCPPB 2865]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKEGGR
FDLPIALGILAASGQIDRQTLADYEFLGELALTGELRGVDGVLPAALAAAQAGRRLIVPLVNGAEAAVAGHVEAFTARTL
LEVCAALNGSQRAPAAEVAIPALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPGLLPESSE
AEALETAAITSVSGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGLVTISRAARSVDFPARFQLVAAMNPCPCGWAGDGSGRCRCSSDSIRRYRSRISGPLLDRIDLHVEVPRLPPQALRSGD
PGEDSTSMRARVVAARQRQLARAGAPNAHLDQAQTDDHCRLEGDDQVLLERAIEHLQLSARSMHRILRVARTIADLDDSA
AIATRHLTEAIGYRKLDRAIGTASAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1039872 ACCQ14_RS18680 WP_184381526.1 4401749..4403269(+) (comM) [Xanthomonas sp. NCPPB 2865]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGGGTGCATGCGCCTGAGGTCCGGGTGGAGGTGCATCTCTCCGG
CGGGCTTCCCTCCACCCAGATCGTGGGCCTGCCCGAGGCTGCGGTACGAGAATCGCGCGAACGCGTGCGTGCGGCGCTGC
TGTGCGCACAATTCGAATTTCCCGCCCGGCGCATCACCATCAACCTGGCCCCGGCCGACTTGCCGAAGGAAGGCGGCCGC
TTCGACCTGCCGATCGCCCTCGGCATCCTGGCCGCCAGCGGGCAGATCGATCGTCAAACCCTTGCCGACTACGAGTTTCT
CGGCGAGCTGGCGCTGACCGGCGAGTTGCGCGGCGTCGATGGCGTGCTGCCGGCCGCCCTGGCTGCCGCGCAGGCCGGGC
GACGGCTGATCGTGCCGCTAGTCAATGGTGCCGAAGCGGCTGTCGCCGGGCACGTCGAGGCCTTCACCGCGCGTACGCTG
CTGGAAGTCTGCGCCGCGCTCAACGGCAGCCAACGGGCGCCCGCTGCCGAAGTAGCGATTCCGGCGCTCGGCGCGCGCGC
GCTGCCCGACATGGCCGATGTGCGCGGCCAGCCGCACGCGCGTCGCGCGCTGGAGATCGCCGCTGCCGGTGGTCACCATT
TATTGCTGGTCGGCAGCCCTGGCTGCGGCAAGACCCTGCTCGCCTCGCGCCTGCCCGGCCTGTTGCCGGAATCCAGCGAG
GCCGAGGCACTGGAAACCGCAGCCATTACCTCGGTCAGCGGCCGCGGGCTGGATCTTGCGCGCTGGCGGCAGCGGCCCTA
CCGGGCTCCGCACCATACCGCCAGCGCGGTCGCATTGGTCGGGGGCGGCACGCATCCGCGCCCGGGCGAGATCTCGCTGG
CCCACAACGGCGTGCTGTTTCTGGACGAATTGCCCGAATGGCAGCGGCAGACGCTGGAAGTATTGCGCGAGCCCCTGGAA
TCGGGCCTGGTGACGATCTCGCGCGCCGCGCGCAGCGTGGATTTCCCCGCACGCTTCCAGCTGGTTGCTGCCATGAACCC
ATGCCCGTGCGGATGGGCCGGCGATGGCAGCGGGCGTTGCCGCTGCAGCAGCGACAGCATCCGCCGCTATCGCAGCCGCA
TCTCCGGCCCGTTGCTGGACCGGATCGACCTGCATGTCGAAGTGCCGCGACTGCCTCCGCAGGCCTTGCGCAGCGGCGAT
CCCGGCGAAGACAGCACCAGCATGCGTGCCCGCGTGGTCGCCGCTCGCCAACGGCAACTCGCGCGTGCCGGCGCACCCAA
CGCTCACCTGGATCAGGCACAGACCGATGACCACTGCCGCCTGGAAGGCGACGATCAGGTGCTGCTGGAACGCGCCATCG
AACACTTGCAGCTCTCCGCACGCTCGATGCATCGCATCCTGCGCGTGGCCCGCACCATTGCCGATCTCGACGACAGTGCG
GCCATTGCCACCCGGCATCTGACCGAGGCCATTGGTTACCGCAAACTGGATCGCGCCATCGGCACGGCGAGCGCGGCGTA
G

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.719

100

0.567
  comM Haemophilus influenzae Rd KW20

54.795

100

0.553
  comM Glaesserella parasuis strain SC1401

54.043

100

0.541
  comM Vibrio campbellii strain DS40M4

53.755

100

0.538
  comM Legionella pneumophila str. Paris

51.308

98.221

0.504
  comM Legionella pneumophila strain ERS1305867

51.308

98.221

0.504
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.472

100

0.457

Multiple sequence alignment