Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACCQ01_RS01935 Genome accession   NZ_CP167840
Coordinates   448955..450475 (-) Length   506 a.a.
NCBI ID   WP_116670835.1    Uniprot ID   -
Organism   Xanthomonas sp. NCPPB 4037     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 443955..455475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCQ01_RS01915 (ACCQ01_01915) - 444440..445561 (+) 1122 WP_228433135.1 acyl-CoA desaturase -
  ACCQ01_RS01920 (ACCQ01_01920) - 445942..447501 (-) 1560 WP_012439470.1 EAL domain-containing protein -
  ACCQ01_RS01925 (ACCQ01_01925) - 447883..448059 (+) 177 WP_012439469.1 hypothetical protein -
  ACCQ01_RS01930 (ACCQ01_01930) - 448070..448579 (-) 510 WP_220357705.1 lipocalin family protein -
  ACCQ01_RS01935 (ACCQ01_01935) comM 448955..450475 (-) 1521 WP_116670835.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACCQ01_RS01940 (ACCQ01_01940) - 450491..450763 (-) 273 WP_011038948.1 accessory factor UbiK family protein -
  ACCQ01_RS01945 (ACCQ01_01945) - 450954..451292 (+) 339 WP_042595602.1 P-II family nitrogen regulator -
  ACCQ01_RS01950 (ACCQ01_01950) - 451613..452272 (-) 660 WP_014506282.1 RIO1 family regulatory kinase/ATPase -
  ACCQ01_RS01955 (ACCQ01_01955) - 452801..453586 (+) 786 WP_228433134.1 hypothetical protein -
  ACCQ01_RS01960 (ACCQ01_01960) speE 453719..454576 (-) 858 WP_042595599.1 polyamine aminopropyltransferase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53855.54 Da        Isoelectric Point: 8.3405

>NTDB_id=1039735 ACCQ01_RS01935 WP_116670835.1 448955..450475(-) (comM) [Xanthomonas sp. NCPPB 4037]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKDGGR
FDLPIALGILAASGQIDRQALADYEFLGELALTGELRGIDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVQAFTARTL
LEVCAALNGTQPPPAAELAIVALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPSLLPDASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGVVTISRAARSMDFPARFQLVAAMNPCPCGWAGDASGRCRCSGDAIRRYRSRISGPLLDRIDLHVDVPRLPPQALRSGA
TGEDSASVRARVAAARERQQARAQVPNARLDQAATDRHCRLGNDDQLLLERAIEHLQLSARSMHRILRVSRTIADLDDSA
DIATRHLTEAIGYRKLDRALDTSSAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1039735 ACCQ01_RS01935 WP_116670835.1 448955..450475(-) (comM) [Xanthomonas sp. NCPPB 4037]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGAGTGCACGCGCCTGAAGTCCGGGTGGAAGTGCATCTCTCCGG
CGGCCTGCCTTCCACCCAGATCGTGGGCCTGCCCGAGGCCGCGGTGCGCGAGTCACGCGAACGGGTCCGTGCCGCCTTGC
TGTGCGCACAGTTCGAATTCCCCGCACGCCGCATCACCATCAACCTGGCGCCGGCGGATCTACCCAAGGACGGCGGGCGC
TTCGACCTGCCGATCGCGCTCGGCATCCTTGCGGCCAGCGGGCAGATCGACCGCCAGGCCCTGGCCGACTACGAATTCCT
CGGCGAGCTGGCCCTCACCGGCGAGCTGCGCGGCATCGATGGGGTGCTGCCTGCGGCCCTGGCCGCCGCGCAGGCCGGGC
GGCGCCTGATCGTGCCGCTGGCCAACGGCGCCGAGGCGGCCATCGCCGGACACGTGCAGGCCTTCACCGCGCGCACCTTG
CTGGAAGTGTGCGCCGCACTCAACGGCACCCAGCCGCCACCGGCCGCCGAACTGGCGATCGTGGCGCTCGGCGCCCGCGC
GCTACCGGACATGGCCGACGTGCGCGGGCAGCCGCATGCACGCCGGGCCCTGGAGATCGCCGCGGCCGGCGGCCATCACC
TGCTGCTGGTCGGCAGCCCTGGCTGCGGCAAGACCCTGCTGGCCTCGCGCCTGCCCAGTCTGTTGCCGGACGCCAGCGAG
GCCGAGGCGCTGGAAACCGCCGCCATCACCTCCATCAGCGGACGCGGCCTGGACCTGGCGCGCTGGCGGCAACGCCCGTA
TCGCGCCCCGCACCACACCGCCAGCGCAGTGGCACTGGTAGGCGGTGGCACCCATCCGCGCCCGGGCGAAATCTCATTGG
CGCACAACGGGGTGCTGTTCCTGGACGAGCTGCCCGAGTGGCAGCGGCAGACCCTGGAAGTGCTGCGCGAGCCGCTGGAG
TCCGGCGTGGTCACCATCTCGCGGGCCGCGCGCAGCATGGACTTCCCGGCGCGGTTCCAGCTGGTCGCCGCAATGAATCC
CTGCCCGTGCGGCTGGGCCGGCGATGCCAGCGGGCGATGCCGCTGCAGTGGTGACGCCATCCGCCGGTATCGCAGCCGCA
TCTCCGGGCCGCTGCTGGATCGCATCGACCTGCACGTCGACGTGCCGCGCCTGCCGCCGCAGGCACTGCGCAGCGGTGCG
ACCGGCGAGGACAGTGCCAGCGTGCGTGCACGCGTCGCCGCCGCGCGCGAACGCCAGCAGGCACGTGCACAGGTGCCCAA
TGCCCGGCTGGACCAGGCCGCCACCGACCGCCACTGCCGGTTGGGCAATGACGATCAGTTGCTGCTGGAACGCGCCATCG
AACATCTGCAGCTGTCCGCGCGCTCGATGCATCGCATTCTGCGCGTTTCGCGCACCATCGCCGATCTCGACGACAGCGCC
GACATCGCCACCCGTCACCTCACCGAAGCCATCGGCTACCGTAAACTCGACCGTGCCCTTGATACCTCCAGCGCCGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.336

100

0.553
  comM Haemophilus influenzae Rd KW20

54.118

100

0.545
  comM Vibrio campbellii strain DS40M4

53.711

100

0.543
  comM Glaesserella parasuis strain SC1401

54.15

100

0.542
  comM Legionella pneumophila str. Paris

53.094

99.012

0.526
  comM Legionella pneumophila strain ERS1305867

53.094

99.012

0.526
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.245

100

0.462

Multiple sequence alignment