Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   ABRP16_RS01390 Genome accession   NZ_CP167825
Coordinates   319014..320072 (-) Length   352 a.a.
NCBI ID   WP_101100965.1    Uniprot ID   -
Organism   Stenotrophomonas lacuserhaii strain WHRI 8086     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 314014..325072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABRP16_RS01370 (ABRP16_001370) - 314988..316955 (-) 1968 WP_349998348.1 type IV pilus secretin PilQ family protein -
  ABRP16_RS01375 (ABRP16_001375) - 316977..317510 (-) 534 WP_101100924.1 pilus assembly protein PilP -
  ABRP16_RS01380 (ABRP16_001380) - 317507..318193 (-) 687 WP_042614424.1 type 4a pilus biogenesis protein PilO -
  ABRP16_RS01385 (ABRP16_001385) - 318190..319014 (-) 825 WP_101100926.1 PilN domain-containing protein -
  ABRP16_RS01390 (ABRP16_001390) pilM 319014..320072 (-) 1059 WP_101100965.1 pilus assembly protein PilM Machinery gene
  ABRP16_RS01395 (ABRP16_001395) - 320292..322715 (+) 2424 WP_182657662.1 penicillin-binding protein 1A -
  ABRP16_RS01400 (ABRP16_001400) - 322821..323468 (+) 648 WP_349998347.1 hypothetical protein -
  ABRP16_RS01405 (ABRP16_001405) - 323496..324218 (-) 723 WP_349998346.1 pilus assembly protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37730.31 Da        Isoelectric Point: 4.3610

>NTDB_id=1039615 ABRP16_RS01390 WP_101100965.1 319014..320072(-) (pilM) [Stenotrophomonas lacuserhaii strain WHRI 8086]
MGLIPKGQSSLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAVNRSGSKVKFAAAA
VAGSAVITKVIPMPADLDENEMEAQVELEAVNYIPYPIEEVNLDFEVLGTIPNNPEMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALVASELPVSSDGVVALVDIGATMTTLNVLRGGRSLYSREQVFGGKQLTDEIMRRFGLSYEE
AGLAKRQGGLPESYEMEVLEPFKEATVQQISRLLQFFYAGSEFNRVDYIVLAGGCAALTGLPELVEEQLGVPTVVANPLA
QMTLGPKVQAHALAQDAPALMIATGLAMRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1039615 ABRP16_RS01390 WP_101100965.1 319014..320072(-) (pilM) [Stenotrophomonas lacuserhaii strain WHRI 8086]
GTGGGGCTCATCCCAAAAGGCCAGTCGTCGCTCATTGGCGTCGACATCAGTTCGACTGCGGTAAAGCTTTTGCAGCTTTC
ACGCAGTGGTAACCGTTTCCGCGTGGAACATTACGCCGTGGAACCGCTGCCGCCGAACGCCGTCGTAGAAAAGAACATCG
TTGAAGTGGAGGCGGTAGGGGAAGCCATCCGTCGCGCCGTCAACCGGTCGGGAAGCAAGGTCAAGTTCGCTGCGGCGGCC
GTGGCGGGCTCGGCGGTGATCACCAAGGTGATCCCGATGCCGGCCGATCTGGACGAGAACGAGATGGAGGCCCAGGTCGA
ACTGGAAGCCGTCAACTACATCCCGTACCCGATCGAAGAAGTAAACCTGGATTTCGAGGTGCTCGGGACCATCCCGAACA
ACCCGGAAATGGTCCAGGTGCTGCTGGCTGCCTCGCGTTCTGAAAACGTCGAGCTGCGCCAGTCGGCGCTGGAACTGGGC
GGACTGACGGCCAAGGTGATGGACGTGGAGGCCTTCGCGGTCGAGAACGCCTTTGCCCTGGTCGCCAGCGAGCTGCCGGT
TTCCAGCGACGGCGTGGTCGCGCTGGTCGACATCGGCGCCACCATGACCACGCTGAACGTGTTGCGCGGGGGGCGCAGCC
TGTACAGCCGTGAGCAGGTGTTCGGCGGCAAGCAGTTGACCGACGAGATCATGCGCCGTTTCGGCCTGAGCTACGAAGAA
GCCGGCCTGGCCAAGCGCCAGGGCGGGCTTCCGGAAAGCTATGAAATGGAGGTGCTGGAGCCGTTCAAGGAAGCCACGGT
CCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTATGCAGGCAGTGAATTCAACCGTGTCGACTACATCGTGCTGGCAGGCG
GCTGCGCCGCGCTGACCGGCCTGCCGGAGCTGGTGGAAGAGCAGCTTGGCGTGCCGACCGTGGTGGCCAACCCGCTGGCG
CAGATGACGCTGGGCCCGAAGGTGCAGGCGCACGCGCTGGCACAGGATGCCCCGGCGCTGATGATCGCCACCGGCCTGGC
GATGAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.136

100

0.511
  comM Acinetobacter nosocomialis M2

51.136

100

0.511
  comM Acinetobacter baylyi ADP1

49.716

100

0.497
  pilM Legionella pneumophila strain ERS1305867

47.309

100

0.474

Multiple sequence alignment