Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABQY74_RS18700 Genome accession   NZ_CP167821
Coordinates   4398446..4399966 (+) Length   506 a.a.
NCBI ID   WP_349794095.1    Uniprot ID   -
Organism   Xanthomonas sp. WHRI 7064     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4393446..4404966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABQY74_RS18680 (ABQY74_018680) - 4394151..4394825 (+) 675 WP_039520988.1 RIO1 family regulatory kinase/ATPase -
  ABQY74_RS18685 (ABQY74_018685) - 4395184..4397166 (-) 1983 WP_349794097.1 beta-N-acetylglucosaminidase domain-containing protein -
  ABQY74_RS18690 (ABQY74_018690) - 4397622..4397960 (-) 339 WP_016904463.1 P-II family nitrogen regulator -
  ABQY74_RS18695 (ABQY74_018695) - 4398152..4398430 (+) 279 WP_039816672.1 accessory factor UbiK family protein -
  ABQY74_RS18700 (ABQY74_018700) comM 4398446..4399966 (+) 1521 WP_349794095.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABQY74_RS18705 (ABQY74_018705) - 4400248..4400757 (+) 510 WP_016904460.1 lipocalin family protein -
  ABQY74_RS18710 (ABQY74_018710) - 4401353..4401529 (-) 177 WP_010374782.1 hypothetical protein -
  ABQY74_RS18715 (ABQY74_018715) - 4401912..4403471 (+) 1560 WP_104571139.1 EAL domain-containing protein -
  ABQY74_RS18720 (ABQY74_018720) - 4403787..4404911 (-) 1125 WP_024939708.1 acyl-CoA desaturase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53813.52 Da        Isoelectric Point: 8.1568

>NTDB_id=1039593 ABQY74_RS18700 WP_349794095.1 4398446..4399966(+) (comM) [Xanthomonas sp. WHRI 7064]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKEGGR
FDLPIALGILAASGQIDRQALAEYEFLGELALTGELRGVDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVEAFTARTL
LEVCAALNGSQRAPAAEVAIPALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPGLLPESSE
AEALETAAITSVSGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGLVTISRAARSVDFPARFQLVAAMNPCPCGWAGDGSGRCRCSSDSIRRYRSRISGPLLDRIDLHVEVPRLPPQALRSGN
LGEDSASMRTRVVAARERQLARAGAPNAQLDQAQTDHHCRLEGDDQVLLERAIEHLQLSARSMHRILRVARTIADLDDSA
AIATRHLTEAIGYRKLDRAMGTASAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1039593 ABQY74_RS18700 WP_349794095.1 4398446..4399966(+) (comM) [Xanthomonas sp. WHRI 7064]
ATGAGTCTAGCGCTGGTGCACAGCCGCGCCCGCGTGGGGGTGCATGCGCCTGAGGTTCGGGTGGAGGTGCATCTCTCCGG
CGGGCTTCCCTCCACCCAGATCGTGGGCCTGCCCGAGGCCGCGGTGCGCGAATCGCGCGAACGCGTGCGTGCGGCGCTGC
TGTGCGCACAATTCGAATTTCCCGCCCGGCGCATCACCATCAATCTGGCGCCGGCCGACTTGCCGAAGGAAGGCGGCCGC
TTCGACCTGCCGATCGCCCTCGGCATCCTGGCCGCCAGCGGGCAGATCGACCGCCAAGCGCTGGCCGAGTACGAGTTTCT
CGGCGAGCTGGCGTTGACCGGCGAGTTGCGTGGCGTCGATGGCGTGCTGCCGGCCGCGCTGGCTGCCGCGCAGGCCGGGC
GACGGCTGATCGTGCCGCTGGCCAACGGTGCAGAAGCGGCCATCGCCGGGCACGTCGAGGCCTTCACCGCGCGCACGCTG
CTGGAAGTCTGCGCCGCGCTCAACGGCAGCCAACGGGCGCCCGCTGCCGAGGTGGCGATCCCGGCGCTCGGCGCGCGTGC
GCTGCCCGACATGGCCGACGTGCGCGGCCAGCCGCACGCACGCCGCGCGCTGGAGATCGCCGCTGCCGGCGGTCACCATT
TATTGCTGGTCGGCAGCCCGGGCTGCGGCAAGACCCTGCTCGCCTCCCGCCTGCCCGGCCTGTTGCCGGAATCCAGTGAG
GCCGAGGCACTGGAAACCGCTGCCATTACCTCGGTCAGCGGCCGCGGGCTGGATCTTGCGCGCTGGCGGCAGCGGCCCTA
TCGCGCCCCGCATCACACCGCCAGCGCGGTTGCGTTGGTCGGTGGCGGCACGCATCCGCGCCCCGGCGAGATCTCGCTGG
CCCACAACGGCGTGCTGTTTCTGGACGAATTGCCCGAATGGCAACGGCAGACGCTGGAAGTGTTGCGCGAGCCCCTGGAA
TCGGGCCTGGTGACGATCTCGCGCGCCGCGCGCAGCGTGGATTTCCCCGCACGCTTCCAGCTGGTTGCTGCCATGAACCC
ATGCCCATGCGGTTGGGCCGGCGATGGCAGCGGGCGTTGCCGCTGCAGCAGCGACAGCATCCGCCGCTACCGCAGCCGCA
TCTCCGGCCCATTGCTGGACCGGATCGACCTGCATGTCGAAGTGCCGCGACTGCCCCCGCAAGCCTTGCGCAGCGGCAAT
CTCGGCGAAGACAGCGCCAGCATGCGTACCCGCGTGGTTGCCGCACGCGAACGGCAACTTGCGCGTGCCGGCGCACCCAA
CGCACAACTGGATCAGGCACAGACCGATCATCATTGCCGCCTGGAGGGCGACGATCAGGTGCTGCTGGAACGTGCCATCG
AACACCTGCAGCTGTCCGCACGCTCGATGCATCGCATCCTGCGCGTGGCCCGCACCATTGCCGATCTCGACGACAGTGCG
GCCATTGCCACCCGGCATCTGACTGAGGCCATTGGCTACCGCAAACTGGATCGCGCCATGGGTACGGCGAGCGCGGCGTA
G

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.917

100

0.569
  comM Haemophilus influenzae Rd KW20

54.99

100

0.555
  comM Glaesserella parasuis strain SC1401

54.241

100

0.543
  comM Vibrio campbellii strain DS40M4

53.953

100

0.54
  comM Legionella pneumophila str. Paris

52.113

98.221

0.512
  comM Legionella pneumophila strain ERS1305867

52.113

98.221

0.512
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.26

100

0.464

Multiple sequence alignment