Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABQY16_RS19530 Genome accession   NZ_CP167815
Coordinates   4562123..4563643 (+) Length   506 a.a.
NCBI ID   WP_046832535.1    Uniprot ID   -
Organism   Xanthomonas citri pv. fuscans strain WHRI 10261     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4557123..4568643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABQY16_RS19510 (ABQY16_019510) - 4557964..4558620 (+) 657 WP_022560198.1 RIO1 family regulatory kinase/ATPase -
  ABQY16_RS19515 (ABQY16_019515) - 4558823..4560817 (-) 1995 WP_046832534.1 beta-N-acetylglucosaminidase domain-containing protein -
  ABQY16_RS19520 (ABQY16_019520) - 4561300..4561674 (-) 375 WP_191480812.1 P-II family nitrogen regulator -
  ABQY16_RS19525 (ABQY16_019525) - 4561829..4562107 (+) 279 WP_022560200.1 accessory factor UbiK family protein -
  ABQY16_RS19530 (ABQY16_019530) comM 4562123..4563643 (+) 1521 WP_046832535.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABQY16_RS19535 (ABQY16_019535) - 4564002..4564511 (+) 510 WP_033481519.1 lipocalin family protein -
  ABQY16_RS19540 (ABQY16_019540) - 4564742..4564918 (-) 177 WP_017158194.1 hypothetical protein -
  ABQY16_RS19545 (ABQY16_019545) - 4565300..4566862 (+) 1563 WP_039731676.1 EAL domain-containing protein -
  ABQY16_RS19550 (ABQY16_019550) - 4566928..4568049 (-) 1122 WP_022560205.1 acyl-CoA desaturase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53948.57 Da        Isoelectric Point: 7.9613

>NTDB_id=1039544 ABQY16_RS19530 WP_046832535.1 4562123..4563643(+) (comM) [Xanthomonas citri pv. fuscans strain WHRI 10261]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKEGGR
FDLPIALGILAASGQIDRQALADYEFLGELALTGELRGVDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVEAFTARTL
LDVCATLNGSQKAPAAELAVQALGARALPDMADVRGQPHARRALEIAAADGHHLLLVGSPGCGKTLLASRLPGLLPEASE
AEALETAAISSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLSHNGVLFLDELPEWQRQTLEVLREPLE
SGVVTIARAARSVDFPARFQLVAAMNPCPCGWAGDGSGRCRCSSDSIRRYRSRISGPLLDRIDLHVEVPRIPPQALRSGN
PGEDSASVRARVVAARQRQLARGELPNAQLDQADTDRHCRLQHDDQVLLERAIEHLQLSARSMHRILRVARTIADLDDSA
DIATRHLTEAIGYRKLDRALGAASAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1039544 ABQY16_RS19530 WP_046832535.1 4562123..4563643(+) (comM) [Xanthomonas citri pv. fuscans strain WHRI 10261]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGGGTGCATGCGCCTGAGGTTCGGGTGGAAGTGCATCTCTCCGG
CGGGCTTCCCTCTACCCAGATCGTGGGCCTGCCCGAAGCGGCAGTGCGCGAATCGCGCGAGCGCGTGCGCGCTGCCCTTC
TGTGCGCACAGTTCGAATTCCCCGCCCGGCGCATCACCATCAACCTGGCACCGGCTGATCTACCGAAAGAAGGCGGCCGG
TTCGATCTGCCGATCGCCCTCGGCATCCTGGCTGCCAGCGGGCAGATCGACCGCCAGGCCCTGGCCGATTACGAATTCCT
CGGCGAGCTTGCGCTTACCGGCGAGCTGCGCGGTGTCGACGGCGTGCTGCCCGCGGCGCTGGCGGCCGCGCAGGCCGGGC
GACGGCTGATCGTCCCGCTCGCCAACGGTGCCGAAGCCGCCATCGCCGGGCACGTCGAAGCCTTCACCGCGCGCACCCTG
CTGGACGTATGCGCCACGCTCAACGGCAGCCAGAAAGCGCCCGCCGCCGAGCTGGCAGTGCAGGCGCTCGGCGCACGCGC
CCTGCCCGATATGGCCGACGTGCGCGGGCAGCCGCACGCACGTCGCGCGCTGGAAATCGCCGCTGCCGATGGGCACCATC
TGTTGCTGGTCGGCAGCCCTGGTTGCGGCAAGACGCTGCTGGCCTCGCGCCTGCCTGGTCTATTGCCCGAAGCCAGCGAA
GCAGAAGCACTGGAAACCGCTGCGATCAGCTCGATCAGCGGCCGTGGGCTGGATCTGGCCCGCTGGCGGCAACGGCCGTA
CCGCGCCCCGCATCACACCGCCAGCGCCGTGGCCCTGGTCGGCGGCGGCACGCATCCGCGCCCCGGCGAGATCTCGCTGT
CTCACAACGGCGTGCTGTTCCTGGACGAATTGCCCGAGTGGCAACGGCAAACCCTGGAAGTGTTGCGCGAGCCCTTGGAG
TCGGGCGTGGTCACGATCGCGCGCGCGGCGCGCAGCGTGGATTTTCCGGCGCGCTTTCAATTGGTCGCCGCCATGAATCC
CTGCCCGTGCGGCTGGGCAGGCGATGGCAGCGGGCGCTGCCGCTGCAGCAGCGACAGCATCCGCCGCTACCGCAGCCGCA
TCTCCGGCCCATTGCTGGACCGTATCGATCTGCATGTCGAAGTGCCACGCATCCCTCCGCAGGCGCTGCGCAGCGGCAAC
CCCGGTGAAGACAGCGCCAGCGTACGTGCCCGCGTGGTCGCCGCGCGACAACGACAGCTTGCACGCGGCGAGCTGCCCAA
CGCGCAACTGGACCAGGCCGACACCGACCGCCATTGCCGTCTGCAACACGACGATCAGGTGCTGCTGGAGCGCGCCATCG
AACACCTGCAGCTGTCCGCGCGCTCGATGCATCGCATCCTGCGCGTTGCGCGCACCATCGCCGATCTCGACGACAGCGCG
GACATCGCCACACGCCATCTCACCGAAGCGATCGGCTACCGCAAACTGGATCGTGCGCTTGGCGCCGCCAGCGCGGCGTA
G

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.929

100

0.559
  comM Haemophilus influenzae Rd KW20

54.599

100

0.551
  comM Glaesserella parasuis strain SC1401

53.452

100

0.536
  comM Vibrio campbellii strain DS40M4

53.36

100

0.534
  comM Legionella pneumophila str. Paris

50.905

98.221

0.5
  comM Legionella pneumophila strain ERS1305867

50.905

98.221

0.5
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.079

100

0.453

Multiple sequence alignment