Detailed information NTG1039537

Bioinformatically predicted

Overview

• Name: pilB
• Type: Machinery gene
• Locus tag: ABQY16_RS16175
• Genome accession: NZ_CP167815
• Coordinates: 3755636..3757372 (-)
• Length: 578 a.a.
• NCBI ID: WP_022558667.1
• Uniprot ID: -
• Organism: Xanthomonas citri pv. fuscans strain WHRI 10261
• Function: power the assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	3757996..3758976	3755636..3757372	flank	624

Gene organization within MGE regions

Location: 3755636..3758976

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABQY16_RS16175 (ABQY16_016175)	pilB	3755636..3757372 (-)	1737	WP_022558667.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABQY16_RS16180 (ABQY16_016180)	pilE	3757435..3757869 (-)	435	WP_007973901.1	pilin	Machinery gene
ABQY16_RS16185 (ABQY16_016185)	-	3757996..3758976 (-)	981	WP_007975311.1	IS5-like element ISXfu2 family transposase	-

Sequence

Protein

• Length: 578 a.a.
• Molecular weight: 62578.67 Da
• Isoelectric Point: 5.6006

>NTDB_id=1039537 ABQY16_RS16175 WP_022558667.1 3755636..3757372(-) (pilB) [Xanthomonas citri pv. fuscans strain WHRI 10261]
MSVLSTANLVGITGIARRLVQDGALEESAARSAMDQAALAKVPLPQWFSEKKLVAASQLAAANAVEFGMPLLDVSAFDAS
QNAVKLVSEELLQKHQVLPLFKRGNRLFVGVSNPTQTRALDDIKFHTNLVVEAILVDEDQIRRTLEQWQASNASLGSSLG
NDDEEMGDLDVSAGDEDMGAGGDSGVDAKGDDTPVVKFVNKVLVDAIRRGASDIHFEPYEDDYRVRLRIDGLLKNVAKAP
VKLNQRIAARLKVMSQLDIAEKRVPQDGRIKLNLSKTKQIDFRVSTLPTLFGEKVVLRILDGSAAKLGIDKLGYEADQQK
LFLEAIHKPYGMVLVTGPTGSGKTVSLYTALGILNDETRNISTAEDPVEIRLPGVNQVQQNNKRGMTFAAALRSFLRQDP
DIIMVGEIRDLETAEIAIKAAQTGHMVLSTLHTNDAPQTIARLMNMGIAPYNITSSVTLVIAQRLARRLCNNCKRKSTLP
DNALLAEGFTPAQLAAGIELYEAVGCDECTEGYKGRTGIYQVMPMTDEIGAIVLEGGNAMQIAEAAQAIGIRDLRQSALM
KAAHGVTSLAEINRVTKD

Nucleotide

• Length: 1737 bp

>NTDB_id=1039537 ABQY16_RS16175 WP_022558667.1 3755636..3757372(-) (pilB) [Xanthomonas citri pv. fuscans strain WHRI 10261]
ATGAGCGTTTTATCGACCGCAAATCTCGTTGGAATCACCGGAATTGCCCGTAGGCTGGTGCAGGATGGCGCACTGGAGGA
AAGCGCGGCTCGAAGCGCGATGGATCAGGCTGCTCTTGCGAAAGTTCCACTGCCTCAGTGGTTCTCGGAGAAAAAGCTCG
TCGCTGCCTCGCAGTTGGCAGCAGCCAACGCAGTCGAGTTCGGCATGCCGCTGCTCGATGTTTCTGCATTCGACGCCAGC
CAGAACGCAGTCAAGCTGGTCAGTGAGGAGTTGCTCCAGAAGCACCAGGTGCTGCCGCTGTTCAAGCGCGGCAACCGGTT
GTTCGTGGGGGTGAGCAACCCGACCCAGACCCGGGCGCTGGACGACATCAAGTTCCATACGAACCTGGTGGTCGAAGCCA
TTCTTGTCGACGAGGATCAGATCCGCCGGACGCTCGAACAGTGGCAGGCTAGCAACGCGTCGTTGGGTTCGTCGCTTGGC
AACGACGACGAGGAGATGGGGGATCTGGACGTTTCGGCTGGCGACGAGGACATGGGCGCCGGCGGGGATTCCGGGGTCGA
TGCCAAGGGCGACGACACGCCGGTGGTGAAGTTCGTCAACAAGGTGCTGGTGGATGCGATCCGGCGGGGAGCGTCGGACA
TCCATTTCGAGCCGTATGAAGACGACTACCGGGTGCGCTTGCGCATCGATGGCCTGTTGAAGAATGTGGCCAAGGCGCCG
GTGAAGCTGAACCAGCGCATCGCGGCGCGCCTGAAGGTGATGTCGCAGCTGGATATCGCCGAGAAGCGGGTGCCGCAGGA
CGGGCGCATCAAGCTCAACCTGTCCAAGACCAAGCAGATCGACTTCCGCGTCAGCACCTTGCCGACCCTGTTCGGTGAAA
AAGTGGTGCTGCGTATCCTGGACGGCAGTGCGGCCAAGCTGGGCATCGACAAGCTGGGCTATGAGGCAGACCAGCAGAAG
TTGTTCCTGGAGGCGATCCACAAGCCCTATGGCATGGTGCTGGTGACCGGGCCGACCGGCTCGGGCAAGACGGTGTCGTT
GTATACGGCGCTGGGAATTCTCAACGACGAGACGCGCAATATCTCCACCGCGGAGGACCCGGTCGAAATCCGCTTGCCTG
GCGTCAATCAGGTACAGCAGAACAACAAGCGTGGCATGACCTTCGCGGCAGCCTTGCGCTCGTTCCTGCGACAGGACCCG
GACATCATCATGGTCGGCGAAATCCGTGACCTGGAGACGGCCGAGATTGCGATCAAGGCGGCGCAGACGGGTCACATGGT
GCTGTCGACGTTGCACACCAACGATGCGCCGCAGACCATCGCCCGTTTGATGAACATGGGCATTGCGCCCTACAACATCA
CCTCGTCAGTGACGCTGGTGATTGCGCAGCGTCTGGCGCGGCGGTTGTGCAACAACTGCAAGCGCAAGTCGACGCTTCCT
GACAACGCATTGCTGGCCGAAGGGTTCACGCCTGCACAGCTTGCCGCCGGGATCGAGCTGTATGAGGCGGTCGGTTGCGA
TGAGTGCACCGAAGGCTACAAGGGGCGTACCGGTATCTACCAGGTGATGCCGATGACCGACGAAATCGGCGCGATCGTGC
TGGAGGGCGGCAACGCGATGCAGATCGCCGAGGCCGCGCAGGCAATCGGTATCCGCGATTTGCGGCAGTCGGCGTTGATG
AAGGCTGCGCACGGGGTGACCAGCCTGGCGGAGATCAATCGAGTGACGAAGGACTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (201-468)

• Type II secretion system (T2SS), protein E, N-terminal domain (MshEN) (50-153)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilB	Acinetobacter baumannii D1279779	55.959	100	0.561
pilB	Acinetobacter baylyi ADP1	54.75	100	0.548
pilB	Legionella pneumophila strain ERS1305867	52.373	98.443	0.516
pilB	Vibrio cholerae strain A1552	48.873	99.827	0.488
pilF	Neisseria gonorrhoeae MS11	49.472	98.27	0.486
pilB	Vibrio parahaemolyticus RIMD 2210633	46.964	96.886	0.455
pilB	Vibrio campbellii strain DS40M4	45.694	98.443	0.45