Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABQV80_RS20665 Genome accession   NZ_CP167813
Coordinates   4546794..4548314 (+) Length   506 a.a.
NCBI ID   WP_024712425.1    Uniprot ID   -
Organism   Xanthomonas oryzae pv. oryzicola strain WHRI 5234     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4541794..4553314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABQV80_RS20640 (ABQV80_020640) - 4542873..4543109 (+) 237 Protein_3922 hypothetical protein -
  ABQV80_RS20650 (ABQV80_020650) - 4543372..4545357 (-) 1986 WP_014504989.1 beta-N-acetylglucosaminidase domain-containing protein -
  ABQV80_RS20655 (ABQV80_020655) - 4545971..4546345 (-) 375 WP_014504990.1 P-II family nitrogen regulator -
  ABQV80_RS20660 (ABQV80_020660) - 4546499..4546777 (+) 279 WP_014504991.1 accessory factor UbiK family protein -
  ABQV80_RS20665 (ABQV80_020665) comM 4546794..4548314 (+) 1521 WP_024712425.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABQV80_RS20675 (ABQV80_020675) - 4548789..4549298 (+) 510 WP_014504993.1 lipocalin family protein -
  ABQV80_RS20680 (ABQV80_020680) - 4549452..4549628 (-) 177 WP_010374782.1 hypothetical protein -
  ABQV80_RS20685 (ABQV80_020685) - 4550011..4551558 (+) 1548 WP_014504995.1 EAL domain-containing protein -
  ABQV80_RS20690 (ABQV80_020690) - 4551624..4552745 (-) 1122 WP_014504996.1 acyl-CoA desaturase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54039.84 Da        Isoelectric Point: 8.4400

>NTDB_id=1039524 ABQV80_RS20665 WP_024712425.1 4546794..4548314(+) (comM) [Xanthomonas oryzae pv. oryzicola strain WHRI 5234]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQMVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKEGGR
FDLPIALGILAASGQIDRQALADYEFLGELALTGELRGIDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVEAFTARTL
LEVCATLNGSQKAPAAELAVQALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPGLLPEASE
AEALETAAITSISGRGLNLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGLVTISRAARSVDFPARFQLVAAMNPCPCGWAGDGSGRCRCSSDSIRRYRSRISGPLLDRIDLHVEVPRLPPQALRSGN
LGEDSASVRCRVVTARQRQLARGALPNAQLDQPDTDRHCRLQHDDQVLLERAIEHLQLSARSMHRILRVARTIADLDDSA
DIATRHLTEAIGYRKLDRALSAASAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1039524 ABQV80_RS20665 WP_024712425.1 4546794..4548314(+) (comM) [Xanthomonas oryzae pv. oryzicola strain WHRI 5234]
ATGAGTCTGGCGTTGGTGCACAGCCGTGCCCGCGTGGGGGTGCACGCGCCCGAAGTTCGGGTGGAAGTGCATCTCTCCGG
CGGTCTCCCCTCCACCCAGATGGTGGGCCTGCCCGAAGCGGCAGTGCGCGAATCGCGCGAACGCGTACGTGCCGCGCTGC
TGTGCGCGCAGTTCGAATTCCCCGCACGGCGCATTACCATCAATCTGGCGCCGGCCGATCTGCCTAAGGAAGGCGGACGG
TTCGATTTGCCGATCGCCCTCGGCATCCTGGCTGCCAGCGGGCAAATCGACCGCCAGGCCCTGGCCGATTACGAATTCCT
CGGCGAGCTTGCGCTTACCGGCGAGCTGCGCGGCATCGATGGCGTGCTGCCCGCGGCGCTGGCGGCCGCGCAGGCAGGGC
GACGGCTGATCGTGCCGCTTGCCAACGGTGCCGAAGCGGCGATTGCCGGGCACGTCGAAGCCTTCACCGCACGCACGCTG
CTTGAGGTGTGCGCGACGCTCAACGGCAGCCAGAAAGCACCTGCAGCCGAATTGGCGGTGCAGGCGCTCGGCGCCCGTGC
CCTGCCCGACATGGCCGATGTGCGCGGGCAACCGCACGCCCGCCGCGCGCTGGAGATCGCCGCTGCCGGTGGGCATCATC
TCCTTCTGGTCGGCAGCCCTGGCTGCGGCAAGACCCTGTTGGCCTCGCGCCTGCCTGGGCTATTGCCCGAAGCCAGCGAA
GCCGAAGCGCTGGAAACCGCGGCCATTACCTCCATCAGCGGCCGCGGACTGAATCTGGCCCGCTGGCGGCAGCGGCCCTA
CCGGGCTCCTCACCACACCGCCAGCGCAGTCGCCTTGGTGGGCGGTGGCACGCATCCGCGCCCCGGCGAGATCTCGCTGG
CCCACAACGGTGTCTTGTTTCTGGACGAGTTGCCCGAGTGGCAACGGCAGACACTCGAGGTGCTGCGCGAGCCGTTGGAA
TCGGGCCTGGTCACGATCTCACGCGCGGCGCGCAGCGTCGACTTCCCTGCACGCTTCCAGCTGGTCGCTGCGATGAACCC
ATGCCCATGCGGTTGGGCAGGCGACGGCAGCGGGCGCTGCCGCTGCAGCAGCGACAGCATCCGCCGCTATCGCAGCCGTA
TTTCCGGCCCCTTGCTGGACCGCATCGATCTGCATGTCGAAGTGCCACGCCTACCACCGCAAGCGCTGCGTAGCGGCAAC
CTCGGCGAGGACAGCGCCAGCGTGCGTTGCCGCGTGGTCACCGCGCGGCAACGCCAGCTTGCGCGCGGAGCGCTGCCCAA
TGCGCAACTGGATCAGCCCGACACCGACCGCCATTGCCGTCTGCAGCACGACGACCAAGTGCTGCTCGAACGCGCCATCG
AACACCTGCAGCTGTCTGCGCGCTCGATGCATCGCATCCTGCGCGTGGCACGCACCATCGCCGATCTCGACGACAGCGCG
GACATCGCCACGCGCCATCTCACCGAAGCGATCGGCTATCGCAAACTGGATCGCGCACTGAGTGCCGCCAGCGCGGCGTA
G

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.917

100

0.569
  comM Haemophilus influenzae Rd KW20

55.382

100

0.559
  comM Glaesserella parasuis strain SC1401

54.438

100

0.545
  comM Vibrio campbellii strain DS40M4

54.348

100

0.543
  comM Legionella pneumophila str. Paris

51.911

98.221

0.51
  comM Legionella pneumophila strain ERS1305867

51.911

98.221

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.063

100

0.462

Multiple sequence alignment