Detailed information NTG0103952

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QUF32_RS13305
• Genome accession: NZ_AP028128
• Coordinates: 2833659..2834528 (+)
• Length: 289 a.a.
• NCBI ID: WP_143683929.1
• Uniprot ID: -
• Organism: Vibrio fluvialis strain IDH05335
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2828659..2839528

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QUF32_RS13285 (KKIDH5335_25490)	nadC	2829116..2830003 (+)	888	WP_061056143.1	carboxylating nicotinate-nucleotide diphosphorylase	-
QUF32_RS13290 (KKIDH5335_25500)	pilA	2830234..2830650 (+)	417	WP_143683926.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
QUF32_RS13295 (KKIDH5335_25510)	pilB	2830657..2832345 (+)	1689	WP_143683927.1	type IV-A pilus assembly ATPase PilB	Machinery gene
QUF32_RS13300 (KKIDH5335_25520)	pilC	2832381..2833607 (+)	1227	WP_143683928.1	type II secretion system F family protein	Machinery gene
QUF32_RS13305 (KKIDH5335_25530)	pilD	2833659..2834528 (+)	870	WP_143683929.1	A24 family peptidase	Machinery gene
QUF32_RS13310 (KKIDH5335_25540)	coaE	2834531..2835139 (+)	609	WP_143683930.1	dephospho-CoA kinase	-
QUF32_RS13315 (KKIDH5335_25550)	zapD	2835172..2835912 (+)	741	WP_020332196.1	cell division protein ZapD	-
QUF32_RS13320 (KKIDH5335_25560)	yacG	2835967..2836164 (+)	198	WP_020332195.1	DNA gyrase inhibitor YacG	-
QUF32_RS13325	-	2836262..2837466 (+)	1205	WP_286236231.1	IS3 family transposase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32272.34 Da
• Isoelectric Point: 6.4660

>NTDB_id=103952 QUF32_RS13305 WP_143683929.1 2833659..2834528(+) (pilD) [Vibrio fluvialis strain IDH05335]
MDIFNFYPWLFPTLATVLGLIIGSFLNVVIYRLPKIMEREWRQECAESFPEYHIEPPQGILTLSTPRSTCPHCETPIRVI
DNIPVLSWLLLRGKCSNCQGPISARYPLIELLTASCSLLIALQFGFSWFAVAMLFFTYTLIAATFIDFDTMLLPDQLTLP
LLWAGIALALAGISPISLQDAVIGAIAGYLSLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPIIILMSSLVGL
VFGLIQLRLQKRGIDKAFPFGPYLAIAGWLSLLFGHDIAGWYFHSVLGF

Nucleotide

• Length: 870 bp

>NTDB_id=103952 QUF32_RS13305 WP_143683929.1 2833659..2834528(+) (pilD) [Vibrio fluvialis strain IDH05335]
ATGGACATTTTTAATTTTTACCCCTGGCTGTTTCCTACGCTGGCGACAGTGCTGGGGTTAATTATCGGCAGTTTCCTCAA
TGTGGTGATTTATCGCCTGCCGAAAATCATGGAGCGCGAGTGGCGTCAGGAGTGTGCGGAATCCTTTCCCGAGTATCATA
TTGAGCCGCCTCAGGGTATTTTAACGCTGAGCACGCCACGTTCCACCTGCCCGCATTGCGAAACGCCGATCCGGGTTATC
GACAACATTCCGGTACTGAGCTGGCTGTTGCTGCGTGGTAAATGCTCGAATTGTCAGGGCCCTATCAGCGCGCGTTATCC
ACTGATTGAACTGCTGACGGCTTCATGCAGCCTCTTGATTGCGCTGCAATTTGGTTTTAGCTGGTTTGCCGTTGCCATGC
TGTTCTTTACCTATACGCTGATTGCGGCAACCTTCATTGATTTCGATACGATGCTGCTGCCGGATCAGCTTACTCTGCCC
CTACTCTGGGCTGGTATTGCGCTGGCGTTGGCGGGCATCAGCCCGATTTCGCTACAAGATGCGGTGATTGGTGCGATAGC
GGGTTATCTGTCGTTATGGTCGGTGTACTGGCTGTTTAAGCTACTGACAGGCAAAGAAGGCATGGGCTATGGCGACTTTA
AGCTGTTAGCGGCTCTCGGTGCCTGGCTGGGATGGCAGCAACTACCGATCATCATTCTGATGTCATCTCTGGTTGGACTG
GTGTTCGGCCTCATTCAACTGCGTCTGCAAAAGCGCGGCATTGATAAAGCATTTCCGTTCGGACCTTATCTGGCGATTGC
AGGCTGGCTGTCTCTGCTGTTTGGTCATGACATTGCGGGTTGGTATTTTCATTCGGTATTAGGATTCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	78.819	99.654	0.785
pilD	Vibrio campbellii strain DS40M4	78.125	99.654	0.779
pilD	Acinetobacter baumannii D1279779	53.285	94.81	0.505
pilD	Acinetobacter nosocomialis M2	52.92	94.81	0.502
pilD	Neisseria gonorrhoeae MS11	50.929	93.08	0.474