Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   ACDJ02_RS02465 Genome accession   NZ_CP167777
Coordinates   516881..517708 (+) Length   275 a.a.
NCBI ID   WP_216069502.1    Uniprot ID   -
Organism   Acinetobacter ursingii strain E5131942     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 511881..522708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDJ02_RS02435 (ACDJ02_02435) rpoZ 512556..512837 (-) 282 WP_004985115.1 DNA-directed RNA polymerase subunit omega -
  ACDJ02_RS02440 (ACDJ02_02440) gmk 512905..513528 (-) 624 WP_262466202.1 guanylate kinase -
  ACDJ02_RS02445 (ACDJ02_02445) ispH 513672..514622 (+) 951 WP_004985120.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ACDJ02_RS02450 (ACDJ02_02450) fimU 514767..515219 (+) 453 WP_151834011.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  ACDJ02_RS02455 (ACDJ02_02455) pilV 515219..515779 (+) 561 WP_372375874.1 type IV pilus modification protein PilV Machinery gene
  ACDJ02_RS02460 (ACDJ02_02460) pilW 515781..516884 (+) 1104 WP_151834013.1 PilW family protein Machinery gene
  ACDJ02_RS02465 (ACDJ02_02465) pilX 516881..517708 (+) 828 WP_216069502.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ACDJ02_RS02470 (ACDJ02_02470) pilY1 517720..522048 (+) 4329 WP_151834015.1 PilC/PilY family type IV pilus protein Machinery gene
  ACDJ02_RS02475 (ACDJ02_02475) comE 522066..522602 (+) 537 WP_151834016.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 275 a.a.        Molecular weight: 28853.58 Da        Isoelectric Point: 5.2038

>NTDB_id=1039303 ACDJ02_RS02465 WP_216069502.1 516881..517708(+) (pilX) [Acinetobacter ursingii strain E5131942]
MKSSSCINNKIMRHQQGATLIIVMIILLIIVVVGILAVRVALVSLGVATNSQVNQLNFQSSDTPLAWFNNVAPTTITDFD
NVIGAALKENESNPGGEYIFCYKPVSSTVGFAQTVDASLIRKADSGNNATVDTGGVAGFCNLSRDFGSNRQAVVTQVAVS
IPTDTNNTTPGSGLPRGINVSEGTQLPKSMTSTQRIRVTTTAMLPAYSASSISSIQQACLSSSTAKISDDLTATLGAGSE
YTLGKCLSDNGVPFSTQVQEFNYLNQLTEVTVPGS

Nucleotide


Download         Length: 828 bp        

>NTDB_id=1039303 ACDJ02_RS02465 WP_216069502.1 516881..517708(+) (pilX) [Acinetobacter ursingii strain E5131942]
ATGAAGTCTTCATCTTGCATAAATAATAAAATTATGAGGCATCAACAAGGTGCGACATTGATTATAGTCATGATTATTTT
ACTGATTATAGTTGTCGTTGGAATTCTTGCCGTACGTGTTGCTTTGGTTTCTTTAGGTGTTGCAACCAATAGTCAGGTCA
ATCAATTAAACTTTCAGTCTTCAGATACGCCACTTGCATGGTTTAATAATGTTGCCCCAACCACGATCACTGATTTCGAT
AATGTTATAGGTGCTGCTTTAAAAGAAAATGAAAGTAATCCAGGTGGTGAATATATTTTTTGTTATAAACCAGTATCTTC
AACTGTCGGATTTGCACAAACAGTAGATGCAAGCTTAATCCGAAAAGCCGATTCAGGAAATAATGCGACTGTGGACACAG
GCGGGGTAGCTGGTTTTTGTAATCTAAGTCGTGATTTTGGTAGTAATAGACAAGCTGTAGTCACACAGGTTGCTGTGAGC
ATACCAACAGATACGAATAATACAACACCTGGTTCTGGTCTGCCTAGAGGAATAAATGTATCTGAAGGAACGCAGTTACC
TAAAAGCATGACATCTACACAAAGAATTCGAGTGACAACCACAGCAATGCTACCAGCATATTCTGCTAGTAGTATTTCAT
CTATTCAACAAGCTTGTTTGAGTTCTAGTACGGCTAAAATTAGTGATGATCTCACAGCGACATTAGGTGCAGGTAGCGAA
TATACATTGGGGAAATGTCTTTCGGATAATGGTGTGCCTTTTAGTACGCAGGTACAGGAATTTAATTATCTTAATCAGTT
AACTGAAGTCACGGTACCAGGAAGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

65.672

97.455

0.64

Multiple sequence alignment