Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY1   Type   Machinery gene
Locus tag   ACDJ02_RS02470 Genome accession   NZ_CP167777
Coordinates   517720..522048 (+) Length   1442 a.a.
NCBI ID   WP_151834015.1    Uniprot ID   -
Organism   Acinetobacter ursingii strain E5131942     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 512720..527048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDJ02_RS02440 (ACDJ02_02440) gmk 512905..513528 (-) 624 WP_262466202.1 guanylate kinase -
  ACDJ02_RS02445 (ACDJ02_02445) ispH 513672..514622 (+) 951 WP_004985120.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ACDJ02_RS02450 (ACDJ02_02450) fimU 514767..515219 (+) 453 WP_151834011.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  ACDJ02_RS02455 (ACDJ02_02455) pilV 515219..515779 (+) 561 WP_372375874.1 type IV pilus modification protein PilV Machinery gene
  ACDJ02_RS02460 (ACDJ02_02460) pilW 515781..516884 (+) 1104 WP_151834013.1 PilW family protein Machinery gene
  ACDJ02_RS02465 (ACDJ02_02465) pilX 516881..517708 (+) 828 WP_216069502.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ACDJ02_RS02470 (ACDJ02_02470) pilY1 517720..522048 (+) 4329 WP_151834015.1 PilC/PilY family type IV pilus protein Machinery gene
  ACDJ02_RS02475 (ACDJ02_02475) comE 522066..522602 (+) 537 WP_151834016.1 type IV pilin protein Machinery gene
  ACDJ02_RS02480 (ACDJ02_02480) pilE 522602..523048 (+) 447 WP_151834017.1 type IV pilin protein Machinery gene
  ACDJ02_RS02485 (ACDJ02_02485) rpsP 523198..523455 (+) 258 WP_004923845.1 30S ribosomal protein S16 -
  ACDJ02_RS02490 (ACDJ02_02490) rimM 523470..524018 (+) 549 WP_004985145.1 ribosome maturation factor RimM -
  ACDJ02_RS02495 (ACDJ02_02495) trmD 524072..524815 (+) 744 WP_151834018.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  ACDJ02_RS02500 (ACDJ02_02500) rplS 524963..525334 (+) 372 WP_004985149.1 50S ribosomal protein L19 -
  ACDJ02_RS02505 (ACDJ02_02505) - 525394..526356 (-) 963 WP_151834019.1 triacylglycerol lipase -

Sequence

Protein


Download         Length: 1442 a.a.        Molecular weight: 152800.97 Da        Isoelectric Point: 7.4801

>NTDB_id=1039304 ACDJ02_RS02470 WP_151834015.1 517720..522048(+) (pilY1) [Acinetobacter ursingii strain E5131942]
MNTELKKFQRNKLWYAICSSSLVMTWLMTASVVQASDLQIYAVPKAGKKTIIMMLDTSGSMGYGAGYNSGNTSGFGIYDD
YDRVCSGLKSITSSTSYANGKLYSVQSTTTPNYSRNFCYISASSASATVKAMDGTGCKPVDASGNEYSYPLPTGITVTGY
RCFDRLTRLKDGMFKFLDSGDSNLPATLVGVGNFSSSSRDSTDGDGKTGQILVPTAKLGDVSTANTSGSQRYLLKDAIAH
LQAYNGTPTANAYAEAAAYLMGTTTLAPFVTVQKDWYKQVATTSYTCPTSGNKYLNPNNGVCYSTYSRGTYGGTTSNSAT
SINITYTQCTAWSTTSFSGTPSQSCSTWGTSLGSTVPSDLAQDGNYQASGSPSTTGGSTSNTGSSTTTTIYYVNDSQSNP
SSGYNGYSGFSKSVSTSKNGTSTNSATAYISPLPATADRVSCDGQGVYLLSDGAANSSGTAIAQSLMKNSLDSSGGSFSC
PNSGGLTTSDSSAAYNCIGEYAKALFDKTRNPTGVPIQTAFVGFGNDFKAGLNGVFSQDYALSSCKLGSRSQNERRSNDQ
CSPGTTPSSQAITAPGYGNGVFNAAFDADDVTNSVIKFINAIGGIPLDPLTTGQISVPYDALNPNNLSQTGYLRAFEPDP
ASSYLTWKGNLKKYSVAMSGANIGAFQGASGGLVYDDTGGFKTGTKDYWNTSAYTDGGKVFLGGAYLQVPLPYNGQTETT
DTNGLITRYAYTASSKLRNLFTDVSAVTGSSLTPSTGSQSGTNLLQIPEKPASAFNSVSSIATYVLGKFDPSNGQAVLKD
FPTTIKLKLLNYLGYSTDITSSSLPTNLTAQDAPYLSMGGSIHSLPVQLTYSGTLDSQGNLTSTRDQSIVYGSMEGGLHI
VDASSGEEQMVFVPSEILNDPTKSKALVVGQTDILSPSHGVDATWVSDPSYAISTATSGGSTVTKVTARQMNIYGGMRMG
GNSYYGLNVLNPSSPKLLFRIDKTTSGFDRLGQTWSKPVLANVRYNGKITRVMIVGGGYDQCYENPNFSLGANVSNTDFT
DTSCNNKSQAQGNAVYIINAKTGDLIWSATNSNGASDGRQYMTHSIVSRISTLDRDADGLVDHLYFGDLGGQVFRADLNN
KATSTSGFGVRVVRLANLATNDANNDANNDYRGSKAPRFYVQPTVTIHDQGANTFIVIGIASGNRSTPLDVYPIQGREGM
LPANALNNQPTNNVYGILDRDFIKRDLITGNPTLDTQDKERSAFKKNPQILTGTQRVVDFFFPSSGSGVAGWYRSLSSQN
TSTSGINSVERADNSFRTKGGLKAFEEEPIAITNNLLVPVYDPEGTGIEPPNPCKPRVIGETDWQRYCLPYGACLNSNGT
LNTNLERKSGFLTKTTNCPAGVGECNDNVLGAGIRGITFVPKPDSGATNSCGKLTIAGNTQGTGEWQCTSRLIQTRWYER
YR

Nucleotide


Download         Length: 4329 bp        

>NTDB_id=1039304 ACDJ02_RS02470 WP_151834015.1 517720..522048(+) (pilY1) [Acinetobacter ursingii strain E5131942]
ATGAATACAGAATTAAAAAAATTTCAAAGAAACAAACTATGGTATGCCATTTGCTCAAGCTCCTTAGTCATGACGTGGTT
AATGACTGCTTCGGTGGTACAAGCCAGTGATTTGCAGATTTATGCTGTACCTAAAGCAGGTAAAAAAACGATTATTATGA
TGTTGGATACCTCTGGATCAATGGGATATGGAGCAGGATATAACAGTGGAAATACAAGTGGTTTTGGTATTTATGATGAT
TATGACCGTGTTTGTTCTGGTTTGAAGAGTATTACTAGCAGTACAAGTTATGCTAATGGTAAGTTGTACTCAGTACAATC
TACTACTACACCAAACTATTCTCGTAATTTTTGTTATATTTCAGCTTCTTCAGCAAGTGCGACTGTAAAAGCAATGGATG
GAACGGGGTGCAAGCCTGTGGATGCAAGTGGTAATGAATACTCTTACCCTTTACCTACAGGTATTACCGTTACCGGTTAT
CGTTGTTTTGACCGGCTAACTCGGCTAAAAGATGGAATGTTTAAGTTTCTGGATAGTGGGGATTCAAATTTACCAGCGAC
ATTGGTTGGTGTGGGTAATTTCTCCTCAAGTAGTCGCGATAGTACAGATGGCGATGGCAAAACAGGACAAATTTTAGTTC
CTACTGCAAAATTAGGTGATGTAAGTACAGCTAATACTTCAGGTTCGCAGCGTTATTTATTAAAAGATGCGATTGCACAT
TTACAAGCGTATAACGGCACCCCAACTGCGAATGCCTACGCAGAAGCAGCAGCGTATTTAATGGGAACCACAACCTTGGC
TCCATTTGTCACTGTACAGAAGGATTGGTATAAACAGGTTGCAACGACAAGCTATACATGTCCAACTTCAGGAAATAAAT
ATTTAAATCCAAATAACGGCGTATGTTATTCCACTTATAGCAGGGGTACATATGGTGGGACAACATCAAACTCAGCAACT
TCTATAAATATTACTTATACGCAATGTACGGCATGGAGTACAACCAGTTTTAGTGGCACGCCTAGCCAAAGTTGTTCAAC
ATGGGGAACATCGTTAGGTTCAACAGTACCCTCAGATTTAGCTCAGGATGGTAATTATCAGGCTTCTGGTAGTCCTTCGA
CCACGGGGGGTAGTACAAGTAATACAGGTTCAAGTACTACAACCACAATATATTATGTAAATGATAGCCAAAGTAACCCA
TCTAGTGGTTATAACGGTTACAGTGGTTTTTCAAAATCCGTCAGTACATCTAAAAATGGCACCTCGACTAATAGTGCAAC
GGCTTATATCTCTCCCTTGCCAGCAACGGCTGATCGAGTTAGTTGTGATGGACAAGGAGTTTATCTTCTGTCGGATGGTG
CGGCAAATAGTTCTGGCACCGCTATTGCTCAGTCTTTAATGAAAAACTCTTTAGATAGTTCTGGTGGGAGTTTTAGTTGT
CCCAATTCTGGTGGTTTAACAACTAGTGATAGCTCTGCTGCGTATAATTGTATAGGTGAATATGCCAAGGCGCTATTTGA
TAAAACTAGAAATCCAACAGGAGTTCCGATTCAAACAGCATTTGTAGGATTTGGTAATGATTTTAAAGCTGGGTTGAATG
GAGTATTTTCACAGGATTATGCGTTAAGTTCTTGTAAGTTAGGTTCTCGCTCCCAAAATGAACGTAGGAGTAATGATCAA
TGTTCTCCTGGAACAACACCAAGTAGTCAGGCGATTACAGCACCAGGTTATGGTAATGGTGTTTTCAATGCGGCTTTTGA
TGCCGATGATGTGACAAATAGTGTGATTAAATTTATTAATGCGATAGGTGGGATTCCACTAGATCCATTAACTACTGGGC
AAATTTCAGTTCCTTATGATGCATTGAATCCAAATAACCTTTCTCAAACGGGCTATCTACGAGCATTTGAACCAGATCCT
GCGAGTAGTTATCTAACATGGAAAGGAAATCTTAAAAAGTATAGCGTTGCAATGAGTGGAGCTAATATTGGAGCATTTCA
AGGGGCTTCTGGTGGCTTAGTTTATGATGATACAGGTGGATTTAAAACAGGAACAAAAGACTACTGGAACACGTCAGCTT
ATACTGATGGTGGTAAGGTATTCTTGGGGGGGGCTTATTTACAAGTGCCTTTACCCTATAATGGACAGACAGAAACTACT
GACACTAATGGATTAATCACAAGATATGCGTATACAGCCTCGAGCAAGCTTCGCAATCTTTTTACAGACGTTTCTGCAGT
TACAGGGTCGTCATTAACGCCGTCTACAGGAAGTCAATCGGGTACCAACTTATTACAGATTCCAGAGAAACCAGCTTCAG
CATTTAACAGTGTGTCATCAATCGCAACTTATGTATTAGGAAAGTTTGATCCTTCAAATGGACAAGCAGTTTTAAAAGAT
TTTCCTACAACAATTAAACTGAAGTTGTTAAATTATTTAGGATATAGCACAGATATTACTTCATCTTCACTACCAACAAA
CTTAACTGCTCAAGATGCGCCTTATTTGTCAATGGGCGGAAGTATTCATTCATTACCAGTACAGTTAACTTATTCTGGAA
CATTAGATAGTCAGGGTAATTTAACCAGTACACGTGATCAATCTATTGTATATGGCTCTATGGAAGGTGGGTTGCATATT
GTCGATGCTTCATCTGGCGAAGAACAAATGGTTTTTGTTCCCTCTGAGATATTAAATGATCCGACAAAATCAAAAGCGTT
AGTTGTTGGGCAAACAGATATATTATCTCCTTCACATGGAGTGGATGCAACTTGGGTTTCTGATCCAAGTTATGCAATTA
GCACTGCAACATCTGGTGGAAGCACAGTAACTAAAGTAACGGCACGCCAAATGAATATCTATGGTGGTATGCGCATGGGT
GGCAATAGCTATTATGGTTTAAATGTGCTTAATCCGAGTAGTCCAAAATTATTATTTAGAATTGATAAAACCACTTCAGG
GTTTGATCGTTTAGGTCAAACCTGGTCTAAACCAGTTTTGGCAAATGTTCGTTATAATGGAAAAATTACCCGTGTCATGA
TTGTGGGTGGTGGCTATGACCAATGTTATGAAAATCCTAATTTTAGTTTAGGCGCAAATGTTTCAAACACGGATTTTACT
GATACTAGCTGTAATAATAAATCACAGGCTCAAGGAAATGCCGTTTATATAATTAATGCTAAAACAGGGGACTTAATATG
GTCAGCGACAAATAGTAATGGTGCATCAGATGGTCGACAATATATGACGCATAGTATTGTCAGTCGTATTAGTACCTTGG
ATCGTGATGCGGATGGTTTAGTTGATCATTTATACTTTGGTGATTTAGGGGGGCAAGTTTTTCGCGCTGACTTGAATAAT
AAAGCAACAAGTACCAGTGGATTTGGTGTGCGTGTGGTTCGTTTGGCGAATTTGGCAACTAATGATGCAAATAACGATGC
AAATAACGACTATAGGGGATCAAAAGCTCCACGTTTCTATGTACAACCCACAGTAACTATCCATGATCAAGGTGCTAATA
CTTTTATTGTTATTGGGATTGCTTCAGGTAATCGTAGTACACCTCTGGATGTGTATCCAATTCAAGGTCGTGAAGGGATG
TTGCCAGCAAATGCATTAAATAATCAACCAACCAATAATGTGTATGGAATTTTGGATCGTGATTTTATAAAAAGAGACTT
AATTACAGGAAATCCTACATTAGACACTCAAGATAAGGAGCGTTCAGCATTTAAAAAGAATCCTCAGATTCTGACAGGAA
CACAGAGAGTAGTGGATTTCTTTTTCCCAAGTTCTGGTTCGGGTGTCGCTGGATGGTACCGTTCTTTATCTAGTCAAAAT
ACATCTACATCAGGGATTAATAGTGTAGAGAGGGCTGATAATAGTTTTAGAACCAAAGGTGGTTTAAAAGCTTTTGAGGA
AGAGCCTATAGCCATTACTAATAATTTACTTGTACCAGTATATGATCCTGAAGGTACTGGTATTGAGCCTCCAAATCCTT
GCAAACCTCGCGTTATCGGTGAAACAGATTGGCAAAGATACTGTTTACCTTATGGGGCTTGCTTAAATTCTAATGGAACA
TTAAATACGAACTTGGAGCGGAAAAGTGGTTTTCTCACAAAAACTACCAACTGTCCTGCTGGTGTGGGTGAGTGCAATGA
TAATGTTCTAGGGGCAGGTATTCGGGGTATTACTTTCGTACCAAAACCCGATAGCGGTGCAACAAACAGTTGCGGTAAAT
TGACAATAGCTGGTAATACTCAAGGAACAGGGGAATGGCAATGTACTAGCCGTTTAATCCAGACACGATGGTATGAGCGT
TACCGTTAA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(849-1121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY1 Acinetobacter baumannii D1279779

56.811

89.598

0.509

Multiple sequence alignment