Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   ACDJ02_RS02450 Genome accession   NZ_CP167777
Coordinates   514767..515219 (+) Length   150 a.a.
NCBI ID   WP_151834011.1    Uniprot ID   -
Organism   Acinetobacter ursingii strain E5131942     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 509767..520219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDJ02_RS02430 (ACDJ02_02430) - 510055..512166 (-) 2112 WP_151724547.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  ACDJ02_RS02435 (ACDJ02_02435) rpoZ 512556..512837 (-) 282 WP_004985115.1 DNA-directed RNA polymerase subunit omega -
  ACDJ02_RS02440 (ACDJ02_02440) gmk 512905..513528 (-) 624 WP_262466202.1 guanylate kinase -
  ACDJ02_RS02445 (ACDJ02_02445) ispH 513672..514622 (+) 951 WP_004985120.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ACDJ02_RS02450 (ACDJ02_02450) fimU 514767..515219 (+) 453 WP_151834011.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  ACDJ02_RS02455 (ACDJ02_02455) pilV 515219..515779 (+) 561 WP_372375874.1 type IV pilus modification protein PilV Machinery gene
  ACDJ02_RS02460 (ACDJ02_02460) pilW 515781..516884 (+) 1104 WP_151834013.1 PilW family protein Machinery gene
  ACDJ02_RS02465 (ACDJ02_02465) pilX 516881..517708 (+) 828 WP_216069502.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 16266.94 Da        Isoelectric Point: 10.3958

>NTDB_id=1039300 ACDJ02_RS02450 WP_151834011.1 514767..515219(+) (fimU) [Acinetobacter ursingii strain E5131942]
MRRSLGFTLIELMVTVAVLAVIATMAAPSMSNLIEKRRYEKNARELLMTLSQAKSQAVMNRGNVNANLSSNNASSPTILN
WAVVNNYTILSISPSVPSSTFIFDQNGLVSNIAVDTSITLCNSKLNIKKNIILTRLGSYIIKPDSTVSAC

Nucleotide


Download         Length: 453 bp        

>NTDB_id=1039300 ACDJ02_RS02450 WP_151834011.1 514767..515219(+) (fimU) [Acinetobacter ursingii strain E5131942]
ATGCGTAGAAGTTTAGGATTTACGCTCATTGAGTTAATGGTCACTGTTGCTGTGTTGGCAGTGATAGCGACGATGGCTGC
ACCTTCTATGTCAAATTTAATTGAAAAACGTCGTTATGAGAAAAATGCAAGGGAATTATTAATGACGTTGTCACAGGCTA
AAAGTCAGGCAGTCATGAATCGCGGAAATGTGAATGCTAATCTTTCTTCAAATAATGCCAGTAGCCCAACAATATTAAAT
TGGGCTGTGGTGAATAATTATACGATATTGAGCATTTCGCCTTCTGTACCCTCATCTACATTTATATTTGATCAAAATGG
ATTAGTTTCAAATATTGCGGTAGATACTTCGATTACTCTATGCAACTCTAAATTGAATATTAAGAAAAACATTATTTTGA
CACGTTTGGGTTCATACATTATTAAACCAGACAGTACAGTGAGTGCATGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

49.324

98.667

0.487

Multiple sequence alignment