Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QUF32_RS00100 Genome accession   NZ_AP028128
Coordinates   22331..23854 (+) Length   507 a.a.
NCBI ID   WP_047461820.1    Uniprot ID   -
Organism   Vibrio fluvialis strain IDH05335     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 17331..28854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUF32_RS00085 (KKIDH5335_00170) ilvE 18952..19893 (-) 942 WP_286235966.1 branched-chain-amino-acid transaminase -
  QUF32_RS00090 (KKIDH5335_00180) ilvM 19905..20189 (-) 285 WP_014204160.1 acetolactate synthase 2 small subunit -
  QUF32_RS00095 (KKIDH5335_00190) ilvG 20201..21847 (-) 1647 WP_020332584.1 acetolactate synthase 2 catalytic subunit -
  QUF32_RS00100 (KKIDH5335_00200) comM 22331..23854 (+) 1524 WP_047461820.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QUF32_RS00105 (KKIDH5335_00210) - 23958..24851 (+) 894 WP_208592738.1 acyltransferase -
  QUF32_RS00110 (KKIDH5335_00220) - 24892..25491 (-) 600 WP_024374484.1 thiol:disulfide interchange protein DsbA/DsbL -
  QUF32_RS00115 (KKIDH5335_00230) - 25522..26508 (-) 987 WP_202640328.1 serine/threonine protein kinase -
  QUF32_RS00120 (KKIDH5335_00240) ccoG 26553..27977 (-) 1425 WP_020332579.1 cytochrome c oxidase accessory protein CcoG -
  QUF32_RS00125 (KKIDH5335_00250) - 28239..28505 (-) 267 WP_020332578.1 DUF1040 family protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55057.03 Da        Isoelectric Point: 8.2092

>NTDB_id=103924 QUF32_RS00100 WP_047461820.1 22331..23854(+) (comM) [Vibrio fluvialis strain IDH05335]
MGLAIIHSRASIGVQAPAVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSKFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASDQIARTQLSDHEFIGELALSGEIRSVKGVLPAALAANQARRSLVVPHFNGDQAALVGKEQHKSARTL
LEVCADLCGQQTLSLFQSDAHDAAVPRERDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMTE
AEAMETASVASLTQQEINQHNWKQRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARVNPQGILRYLSRLSGPLLDRFDMSIEIPALPKGTLSHGGDR
GEPTAVVQARVFRARETMLARSGKVNALLQSREIETYCPLSQPDAEFLENALHRLGLSIRAYHRIIKVARTIADLSGEAH
IQRAHLAEALGYRAMDRLLKQLTAQSV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=103924 QUF32_RS00100 WP_047461820.1 22331..23854(+) (comM) [Vibrio fluvialis strain IDH05335]
ATGGGGCTTGCTATCATTCATAGCCGTGCCAGCATCGGTGTTCAGGCACCAGCGGTGACGGTGGAAGTACACATCAGTAA
CGGTATGCCGGGGTTTACGCTGGTTGGTTTGCCGGAGACAACCGTCAAAGAATCCCGCGATCGCGTGCGCAGCGCCATCA
TCAATTCCAAGTTTGAATTTCCCGCCAAACGCATTACCGTCAATTTAGCGCCCGCTGATCTGCCCAAAGAGGGCGGCCGT
TTTGATTTGCCGATCGCGCTCGGCATTCTGGCTGCTTCGGATCAGATTGCCCGCACCCAATTGAGCGACCATGAATTCAT
CGGTGAGTTGGCGCTGTCGGGGGAAATTCGCAGCGTGAAAGGCGTGCTGCCCGCAGCCTTGGCGGCCAATCAGGCGCGGC
GCAGTTTGGTGGTGCCCCATTTCAATGGCGATCAGGCGGCGCTGGTGGGGAAAGAGCAACATAAATCGGCGCGCACTCTG
CTTGAAGTGTGTGCCGATCTGTGTGGTCAACAGACGTTATCGCTGTTTCAAAGTGACGCGCACGACGCCGCCGTGCCGCG
CGAACGCGATTTGCAGGACATCATTGGTCAGCAGCAAGGCAAGCGGGCGTTGGAGATAGCAGCGGCGGGCAACCACAACC
TACTGTTTCTTGGCCCGCCGGGCACAGGTAAAACTATGTTGGCCTCGCGTCTGTGCGATCTGCTGCCAGAGATGACTGAG
GCCGAGGCGATGGAGACTGCATCAGTGGCCTCGCTGACGCAGCAGGAAATCAACCAGCACAACTGGAAACAGCGTCCGTT
TCGCGCGCCGCATCATTCCAGCTCCATGGCTGCACTGGTAGGTGGCGGCACTATTCCCCGCCCCGGAGAAATCTCACTTG
CTCACAATGGCCTACTGTTTCTGGATGAAATGCCGGAGTTTGAACGCAAAGTGCTCGATTCACTGCGCGAGCCGCTGGAG
TCGGGCGAGATTATTATTTCCCGCGCGCAGGGCAAAACCCGTTTCCCAGCGCGTTTTCAGTTGGTTGGCGCGCTCAATCC
CAGTCCGACCGGGTATTACGAAGGCAATCAGGCGCGGGTGAATCCGCAGGGGATTTTACGCTATTTGAGCCGTTTGTCGG
GGCCGCTGCTGGATCGCTTTGATATGTCGATCGAAATTCCGGCGTTGCCCAAAGGCACTTTGTCGCACGGCGGCGACCGC
GGCGAGCCGACGGCGGTGGTGCAGGCGCGGGTCTTTCGCGCACGTGAAACCATGCTGGCACGCAGTGGCAAAGTGAATGC
GCTGTTGCAAAGCCGTGAAATCGAAACTTATTGCCCGCTCAGTCAGCCGGATGCGGAATTTCTGGAAAATGCGCTGCACC
GCCTGGGGTTGTCAATCAGGGCCTATCACCGCATCATCAAAGTCGCGCGCACCATTGCCGATTTGAGCGGTGAGGCACAC
ATTCAACGGGCGCACCTGGCCGAAGCGCTCGGGTATCGCGCTATGGACCGGTTACTCAAACAGCTCACCGCCCAATCGGT
CTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

89.349

100

0.893
  comM Vibrio campbellii strain DS40M4

85.01

100

0.85
  comM Haemophilus influenzae Rd KW20

66.469

100

0.665
  comM Glaesserella parasuis strain SC1401

64.51

100

0.649
  comM Legionella pneumophila str. Paris

49.798

97.83

0.487
  comM Legionella pneumophila strain ERS1305867

49.798

97.83

0.487
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.688

99.803

0.426

Multiple sequence alignment