Detailed information    

insolico Bioinformatically predicted

Overview


Name   comA   Type   Regulator
Locus tag   CIL07_RS06580 Genome accession   NZ_CP167253
Coordinates   1367897..1370089 (-) Length   730 a.a.
NCBI ID   WP_100908635.1    Uniprot ID   A0AAP9HIX0
Organism   Lacticaseibacillus paracasei subsp. paracasei strain NTU 101     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1357371..1400395 1367897..1370089 within 0


Gene organization within MGE regions


Location: 1357371..1400395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CIL07_RS06510 (CIL07_06510) - 1357371..1358000 (+) 630 WP_003576277.1 helix-turn-helix domain-containing protein -
  CIL07_RS06515 (CIL07_06515) - 1358136..1358465 (+) 330 WP_003567322.1 PadR family transcriptional regulator -
  CIL07_RS06520 (CIL07_06520) - 1358462..1359250 (+) 789 WP_003605955.1 hypothetical protein -
  CIL07_RS06525 (CIL07_06525) - 1359303..1360091 (+) 789 WP_003567326.1 hypothetical protein -
  CIL07_RS06530 (CIL07_06530) - 1360193..1360414 (-) 222 WP_103213949.1 bacteriocin immunity protein -
  CIL07_RS06535 (CIL07_06535) - 1360438..1360722 (-) 285 WP_003567331.1 bacteriocin immunity protein -
  CIL07_RS06540 (CIL07_06540) - 1360916..1361212 (-) 297 WP_003605958.1 bacteriocin immunity protein -
  CIL07_RS06545 (CIL07_06545) - 1361314..1362669 (-) 1356 WP_003567335.1 threonine/serine exporter ThrE family protein -
  CIL07_RS06550 (CIL07_06550) - 1362975..1363286 (-) 312 WP_003580849.1 hypothetical protein -
  CIL07_RS06555 (CIL07_06555) - 1363359..1363709 (-) 351 WP_003567340.1 hypothetical protein -
  CIL07_RS06560 (CIL07_06560) - 1363883..1364023 (-) 141 Protein_1291 bacteriocin secretion accessory protein -
  CIL07_RS06565 (CIL07_06565) - 1364177..1365592 (+) 1416 WP_003600251.1 IS5-like element ISLca2 family transposase -
  CIL07_RS06570 (CIL07_06570) - 1365704..1366624 (+) 921 WP_003574021.1 IS30 family transposase -
  CIL07_RS06575 (CIL07_06575) - 1366638..1367886 (-) 1249 Protein_1294 bacteriocin secretion accessory protein -
  CIL07_RS06580 (CIL07_06580) comA 1367897..1370089 (-) 2193 WP_100908635.1 peptide cleavage/export ABC transporter Regulator
  CIL07_RS06585 (CIL07_06585) - 1370556..1370693 (-) 138 WP_003571414.1 bacteriocin-like peptide, LSEI_2386 family -
  CIL07_RS06590 (CIL07_06590) - 1370894..1372192 (+) 1299 WP_045603255.1 GHKL domain-containing protein -
  CIL07_RS06595 (CIL07_06595) - 1372197..1373003 (+) 807 WP_003567351.1 LytTR family DNA-binding domain-containing protein -
  CIL07_RS06600 (CIL07_06600) - 1373335..1373586 (+) 252 WP_003586983.1 IS3 family transposase -
  CIL07_RS06605 (CIL07_06605) - 1373640..1374482 (+) 843 WP_029327644.1 IS3 family transposase -
  CIL07_RS06610 (CIL07_06610) - 1374599..1375050 (-) 452 Protein_1301 IS5 family transposase -
  CIL07_RS06615 (CIL07_06615) - 1375359..1378181 (+) 2823 WP_003587111.1 cation-transporting P-type ATPase -
  CIL07_RS06620 (CIL07_06620) - 1378241..1378504 (+) 264 WP_003587109.1 hypothetical protein -
  CIL07_RS06625 (CIL07_06625) - 1378556..1378981 (+) 426 WP_032676118.1 helix-turn-helix domain-containing protein -
  CIL07_RS06630 (CIL07_06630) - 1379139..1379894 (-) 756 WP_279280242.1 IS3 family transposase -
  CIL07_RS06635 (CIL07_06635) - 1380034..1380285 (-) 252 WP_003586983.1 IS3 family transposase -
  CIL07_RS06640 (CIL07_06640) - 1380366..1381447 (-) 1082 Protein_1307 GcrA family cell cycle regulator -
  CIL07_RS06645 (CIL07_06645) - 1381870..1382088 (+) 219 WP_103213785.1 CsbD family protein -
  CIL07_RS06650 (CIL07_06650) - 1382284..1383282 (-) 999 WP_128538893.1 IS30 family transposase -
  CIL07_RS06655 (CIL07_06655) - 1383533..1384186 (-) 654 WP_003586931.1 hypothetical protein -
  CIL07_RS06660 (CIL07_06660) - 1384699..1385142 (-) 444 WP_010493154.1 ArpU family phage packaging/lysis transcriptional regulator -
  CIL07_RS06665 (CIL07_06665) - 1385657..1385989 (-) 333 WP_003586929.1 hypothetical protein -
  CIL07_RS06670 (CIL07_06670) - 1386059..1386346 (-) 288 WP_010493149.1 hypothetical protein -
  CIL07_RS06675 (CIL07_06675) - 1386358..1387095 (-) 738 WP_003572217.1 hypothetical protein -
  CIL07_RS06680 (CIL07_06680) - 1387097..1387519 (-) 423 WP_003564822.1 hypothetical protein -
  CIL07_RS06685 (CIL07_06685) - 1387566..1388084 (-) 519 WP_003574016.1 3'-5' exonuclease -
  CIL07_RS06690 (CIL07_06690) - 1388084..1388908 (-) 825 WP_003574014.1 ATP-binding protein -
  CIL07_RS06695 (CIL07_06695) - 1388923..1389669 (-) 747 WP_003586926.1 DnaD domain protein -
  CIL07_RS06700 (CIL07_06700) - 1389662..1389976 (-) 315 WP_003661649.1 hypothetical protein -
  CIL07_RS06705 (CIL07_06705) - 1390157..1390702 (+) 546 WP_103213786.1 hypothetical protein -
  CIL07_RS06710 (CIL07_06710) - 1390685..1390888 (-) 204 WP_003572201.1 hypothetical protein -
  CIL07_RS06715 (CIL07_06715) - 1390973..1391329 (-) 357 WP_003586919.1 DUF771 domain-containing protein -
  CIL07_RS06720 (CIL07_06720) - 1391395..1391646 (+) 252 WP_003606636.1 DUF1883 domain-containing protein -
  CIL07_RS06725 (CIL07_06725) - 1391639..1391818 (-) 180 WP_003572193.1 hypothetical protein -
  CIL07_RS06730 (CIL07_06730) - 1391819..1392577 (-) 759 WP_010493122.1 ORF6N domain-containing protein -
  CIL07_RS06735 (CIL07_06735) - 1392638..1393471 (+) 834 WP_003586916.1 TIGR02391 family protein -
  CIL07_RS06740 (CIL07_06740) - 1393442..1393642 (-) 201 WP_003572187.1 hypothetical protein -
  CIL07_RS06745 (CIL07_06745) - 1393684..1393932 (-) 249 WP_003574003.1 hypothetical protein -
  CIL07_RS06750 (CIL07_06750) - 1394176..1394529 (+) 354 WP_003572184.1 helix-turn-helix domain-containing protein -
  CIL07_RS06755 (CIL07_06755) - 1394522..1394944 (+) 423 WP_003572182.1 ImmA/IrrE family metallo-endopeptidase -
  CIL07_RS06760 (CIL07_06760) - 1395103..1395810 (+) 708 WP_003586913.1 zinc ribbon domain-containing protein -
  CIL07_RS06765 (CIL07_06765) - 1396060..1396239 (+) 180 WP_016365098.1 hypothetical protein -
  CIL07_RS06770 (CIL07_06770) - 1396223..1396843 (-) 621 WP_003586911.1 hypothetical protein -
  CIL07_RS06775 (CIL07_06775) - 1397036..1397956 (+) 921 WP_003574021.1 IS30 family transposase -
  CIL07_RS06780 (CIL07_06780) - 1397987..1398247 (+) 261 WP_003606553.1 hypothetical protein -
  CIL07_RS06785 (CIL07_06785) - 1398360..1399529 (+) 1170 WP_003569067.1 site-specific integrase -
  CIL07_RS06795 (CIL07_06795) - 1399850..1400395 (+) 546 WP_003604444.1 hypothetical protein -

Sequence


Protein


Download         Length: 730 a.a.        Molecular weight: 81290.50 Da        Isoelectric Point: 7.0227

>NTDB_id=1039147 CIL07_RS06580 WP_100908635.1 1367897..1370089(-) (comA) [Lacticaseibacillus paracasei subsp. paracasei strain NTU 101]
MIKYNLKLGQAQYYKRYYTPQVDERDCGVAALNMLLQFNGSDYSLAHLRQLAKTDQEGTTALGIVRAAQALHFETKAVKA
DMTLFDLDDVPYPFLVHVLKRGELLHYYVVFKATKDHILIGDPDSSVAMTWLPKERFAKEWSGVAIFIAPEPQYQPRKED
KGSLFAFVPMLARQKGIIANIIVAAVLITLISIVGSYFLQSIIDTYIPNGMRTTLGMIASGLILAYVLQSVLTYGQNFLM
AVLGQRLSIDVILGYVRHLYELPMSFFSTRRTGEIVSRFSDANKIIDALANTIMTLFLDIWIVLILGIVLGIQNTTLFLV
SLIAVPCYLVIVFAFQRPFNRLNQETMESNAILSSSIIEDLNGIETIKSLTGEKVSYERVDREFVTYLKKSFNYTKADQL
QQAIKGLLKLVLNVVVLWIGASLVMANKMSLGQMLTFNALLAYFTNPLESIINLQPKLQMAKVANNRLNEVYLVESEFKE
QRSLNDRHLIDGAINVTDVSFKYGFGQDVLKQINLEIPENAKYTIVGMSGSGKSTLAKLLVGFYPVDTGKGKITFNGVPI
SDVDLTTLRQYIEYVPQDPFIFSGSVIENLTLGSRSNITEADIEAACSVAEIAGDISNLPQIWQTKLSESGSILSGGQKQ
RLAIARALLSPAKVLIFDESTSSLDTITERKIVDRLLAMTDRTIIFVAHRLTIAAKTEQIVVMDHGAIVEQGNHAELLAK
QGYYARLVSE

Nucleotide


Download         Length: 2193 bp        

>NTDB_id=1039147 CIL07_RS06580 WP_100908635.1 1367897..1370089(-) (comA) [Lacticaseibacillus paracasei subsp. paracasei strain NTU 101]
ATGATCAAATACAACCTAAAGCTCGGCCAAGCACAGTATTACAAGCGTTACTACACGCCTCAGGTGGATGAGCGCGATTG
CGGGGTTGCGGCGCTTAATATGCTGCTGCAATTTAATGGCTCGGATTATTCGCTAGCGCATCTGCGACAGTTGGCGAAGA
CGGATCAGGAAGGAACAACAGCGTTAGGGATTGTCCGAGCTGCTCAGGCACTTCATTTTGAAACCAAGGCTGTCAAGGCG
GATATGACGCTGTTTGATCTTGATGATGTTCCTTATCCGTTTCTTGTCCATGTTTTGAAGCGTGGCGAGTTGCTTCATTA
TTATGTGGTGTTTAAGGCGACAAAGGATCATATCTTGATTGGCGATCCTGATTCATCAGTAGCGATGACCTGGCTTCCCA
AAGAGCGCTTTGCGAAGGAGTGGTCGGGGGTCGCTATTTTTATTGCGCCAGAACCGCAATATCAACCACGCAAAGAGGAC
AAAGGCAGTCTCTTTGCGTTTGTGCCGATGCTAGCGCGACAAAAAGGAATCATTGCCAATATTATTGTCGCCGCTGTGTT
GATCACGTTGATTAGTATTGTCGGGTCTTATTTTCTTCAGTCGATTATTGATACTTATATTCCAAACGGGATGCGCACAA
CTTTGGGAATGATTGCCAGTGGTCTCATCCTCGCTTATGTGCTGCAGTCGGTTTTAACCTATGGGCAAAATTTTTTGATG
GCTGTTTTAGGACAACGTTTGTCGATTGATGTCATTTTGGGTTACGTCAGACACCTTTATGAATTACCTATGTCCTTCTT
TTCCACGCGTCGGACTGGGGAAATTGTGTCGCGGTTTTCCGATGCTAATAAAATTATTGATGCGCTGGCGAACACGATTA
TGACCTTGTTTCTTGATATTTGGATTGTCTTAATTTTAGGGATCGTGTTAGGCATTCAAAACACCACCTTATTCTTGGTG
TCTTTAATTGCTGTGCCTTGTTATTTGGTGATTGTGTTCGCTTTTCAGCGGCCATTTAATCGACTGAATCAAGAGACGAT
GGAAAGCAATGCCATTTTGAGTTCATCCATTATCGAGGATTTGAACGGGATTGAGACGATTAAATCACTGACCGGTGAGA
AAGTCAGTTATGAACGGGTTGACCGTGAATTCGTCACGTATTTGAAAAAGTCGTTCAATTATACAAAAGCCGATCAACTG
CAGCAGGCGATCAAGGGACTGCTGAAGTTGGTTTTGAATGTGGTCGTGCTGTGGATTGGTGCGAGTTTGGTGATGGCTAA
CAAGATGAGTCTAGGACAGATGCTGACGTTCAATGCGTTGTTGGCATATTTCACTAATCCGTTAGAAAGCATCATTAATT
TGCAACCAAAATTGCAAATGGCCAAAGTCGCGAATAACCGGCTGAATGAAGTGTATTTGGTTGAATCGGAGTTTAAAGAA
CAGCGAAGTTTGAATGATCGGCATTTAATTGATGGCGCTATCAATGTGACCGATGTGTCCTTTAAGTATGGTTTTGGGCA
AGATGTTTTGAAGCAAATCAATCTTGAAATCCCAGAGAATGCCAAATACACCATTGTCGGCATGAGTGGATCAGGGAAAT
CGACCTTAGCCAAGTTGCTAGTAGGTTTCTATCCAGTGGACACTGGCAAAGGGAAAATCACATTTAATGGGGTTCCAATC
AGTGATGTTGATCTAACAACGTTACGACAATATATCGAGTATGTACCACAAGATCCGTTTATTTTTTCTGGCTCAGTCAT
TGAAAACTTAACGTTGGGTAGCCGTTCGAATATCACTGAAGCCGATATTGAAGCTGCCTGTTCAGTGGCAGAAATTGCCG
GAGATATTTCGAATTTGCCGCAGATATGGCAGACCAAACTTTCTGAAAGCGGCAGTATTTTATCGGGTGGACAAAAGCAG
CGCCTAGCAATTGCCCGCGCGTTATTATCACCGGCAAAAGTGTTGATTTTTGATGAATCGACCAGCAGTTTAGATACGAT
CACCGAGCGAAAAATTGTTGATCGGTTGTTAGCAATGACTGATCGAACCATTATTTTTGTGGCTCATCGGCTGACCATTG
CTGCTAAAACGGAACAGATTGTGGTCATGGACCATGGTGCGATTGTTGAACAAGGAAATCATGCTGAGTTATTGGCCAAA
CAAGGCTATTATGCTCGGTTGGTAAGTGAGTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis NCTC 12261

58.774

98.356

0.578

  comA Streptococcus pneumoniae Rx1

58.217

98.356

0.573

  comA Streptococcus pneumoniae D39

58.217

98.356

0.573

  comA Streptococcus pneumoniae R6

58.217

98.356

0.573

  comA Streptococcus mitis SK321

58.078

98.356

0.571

  comA Streptococcus pneumoniae TIGR4

57.799

98.356

0.568

  comA Streptococcus gordonii str. Challis substr. CH1

56.964

98.356

0.56

  comA/nlmT Streptococcus mutans UA159

54.848

98.904

0.542


Multiple sequence alignment