Detailed information
Overview
| Name | comA | Type | Regulator |
| Locus tag | CIL07_RS06580 | Genome accession | NZ_CP167253 |
| Coordinates | 1367897..1370089 (-) | Length | 730 a.a. |
| NCBI ID | WP_100908635.1 | Uniprot ID | A0AAP9HIX0 |
| Organism | Lacticaseibacillus paracasei subsp. paracasei strain NTU 101 | ||
| Function | processing and transport of ComC (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1357371..1400395 | 1367897..1370089 | within | 0 |
Gene organization within MGE regions
Location: 1357371..1400395
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CIL07_RS06510 (CIL07_06510) | - | 1357371..1358000 (+) | 630 | WP_003576277.1 | helix-turn-helix domain-containing protein | - |
| CIL07_RS06515 (CIL07_06515) | - | 1358136..1358465 (+) | 330 | WP_003567322.1 | PadR family transcriptional regulator | - |
| CIL07_RS06520 (CIL07_06520) | - | 1358462..1359250 (+) | 789 | WP_003605955.1 | hypothetical protein | - |
| CIL07_RS06525 (CIL07_06525) | - | 1359303..1360091 (+) | 789 | WP_003567326.1 | hypothetical protein | - |
| CIL07_RS06530 (CIL07_06530) | - | 1360193..1360414 (-) | 222 | WP_103213949.1 | bacteriocin immunity protein | - |
| CIL07_RS06535 (CIL07_06535) | - | 1360438..1360722 (-) | 285 | WP_003567331.1 | bacteriocin immunity protein | - |
| CIL07_RS06540 (CIL07_06540) | - | 1360916..1361212 (-) | 297 | WP_003605958.1 | bacteriocin immunity protein | - |
| CIL07_RS06545 (CIL07_06545) | - | 1361314..1362669 (-) | 1356 | WP_003567335.1 | threonine/serine exporter ThrE family protein | - |
| CIL07_RS06550 (CIL07_06550) | - | 1362975..1363286 (-) | 312 | WP_003580849.1 | hypothetical protein | - |
| CIL07_RS06555 (CIL07_06555) | - | 1363359..1363709 (-) | 351 | WP_003567340.1 | hypothetical protein | - |
| CIL07_RS06560 (CIL07_06560) | - | 1363883..1364023 (-) | 141 | Protein_1291 | bacteriocin secretion accessory protein | - |
| CIL07_RS06565 (CIL07_06565) | - | 1364177..1365592 (+) | 1416 | WP_003600251.1 | IS5-like element ISLca2 family transposase | - |
| CIL07_RS06570 (CIL07_06570) | - | 1365704..1366624 (+) | 921 | WP_003574021.1 | IS30 family transposase | - |
| CIL07_RS06575 (CIL07_06575) | - | 1366638..1367886 (-) | 1249 | Protein_1294 | bacteriocin secretion accessory protein | - |
| CIL07_RS06580 (CIL07_06580) | comA | 1367897..1370089 (-) | 2193 | WP_100908635.1 | peptide cleavage/export ABC transporter | Regulator |
| CIL07_RS06585 (CIL07_06585) | - | 1370556..1370693 (-) | 138 | WP_003571414.1 | bacteriocin-like peptide, LSEI_2386 family | - |
| CIL07_RS06590 (CIL07_06590) | - | 1370894..1372192 (+) | 1299 | WP_045603255.1 | GHKL domain-containing protein | - |
| CIL07_RS06595 (CIL07_06595) | - | 1372197..1373003 (+) | 807 | WP_003567351.1 | LytTR family DNA-binding domain-containing protein | - |
| CIL07_RS06600 (CIL07_06600) | - | 1373335..1373586 (+) | 252 | WP_003586983.1 | IS3 family transposase | - |
| CIL07_RS06605 (CIL07_06605) | - | 1373640..1374482 (+) | 843 | WP_029327644.1 | IS3 family transposase | - |
| CIL07_RS06610 (CIL07_06610) | - | 1374599..1375050 (-) | 452 | Protein_1301 | IS5 family transposase | - |
| CIL07_RS06615 (CIL07_06615) | - | 1375359..1378181 (+) | 2823 | WP_003587111.1 | cation-transporting P-type ATPase | - |
| CIL07_RS06620 (CIL07_06620) | - | 1378241..1378504 (+) | 264 | WP_003587109.1 | hypothetical protein | - |
| CIL07_RS06625 (CIL07_06625) | - | 1378556..1378981 (+) | 426 | WP_032676118.1 | helix-turn-helix domain-containing protein | - |
| CIL07_RS06630 (CIL07_06630) | - | 1379139..1379894 (-) | 756 | WP_279280242.1 | IS3 family transposase | - |
| CIL07_RS06635 (CIL07_06635) | - | 1380034..1380285 (-) | 252 | WP_003586983.1 | IS3 family transposase | - |
| CIL07_RS06640 (CIL07_06640) | - | 1380366..1381447 (-) | 1082 | Protein_1307 | GcrA family cell cycle regulator | - |
| CIL07_RS06645 (CIL07_06645) | - | 1381870..1382088 (+) | 219 | WP_103213785.1 | CsbD family protein | - |
| CIL07_RS06650 (CIL07_06650) | - | 1382284..1383282 (-) | 999 | WP_128538893.1 | IS30 family transposase | - |
| CIL07_RS06655 (CIL07_06655) | - | 1383533..1384186 (-) | 654 | WP_003586931.1 | hypothetical protein | - |
| CIL07_RS06660 (CIL07_06660) | - | 1384699..1385142 (-) | 444 | WP_010493154.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| CIL07_RS06665 (CIL07_06665) | - | 1385657..1385989 (-) | 333 | WP_003586929.1 | hypothetical protein | - |
| CIL07_RS06670 (CIL07_06670) | - | 1386059..1386346 (-) | 288 | WP_010493149.1 | hypothetical protein | - |
| CIL07_RS06675 (CIL07_06675) | - | 1386358..1387095 (-) | 738 | WP_003572217.1 | hypothetical protein | - |
| CIL07_RS06680 (CIL07_06680) | - | 1387097..1387519 (-) | 423 | WP_003564822.1 | hypothetical protein | - |
| CIL07_RS06685 (CIL07_06685) | - | 1387566..1388084 (-) | 519 | WP_003574016.1 | 3'-5' exonuclease | - |
| CIL07_RS06690 (CIL07_06690) | - | 1388084..1388908 (-) | 825 | WP_003574014.1 | ATP-binding protein | - |
| CIL07_RS06695 (CIL07_06695) | - | 1388923..1389669 (-) | 747 | WP_003586926.1 | DnaD domain protein | - |
| CIL07_RS06700 (CIL07_06700) | - | 1389662..1389976 (-) | 315 | WP_003661649.1 | hypothetical protein | - |
| CIL07_RS06705 (CIL07_06705) | - | 1390157..1390702 (+) | 546 | WP_103213786.1 | hypothetical protein | - |
| CIL07_RS06710 (CIL07_06710) | - | 1390685..1390888 (-) | 204 | WP_003572201.1 | hypothetical protein | - |
| CIL07_RS06715 (CIL07_06715) | - | 1390973..1391329 (-) | 357 | WP_003586919.1 | DUF771 domain-containing protein | - |
| CIL07_RS06720 (CIL07_06720) | - | 1391395..1391646 (+) | 252 | WP_003606636.1 | DUF1883 domain-containing protein | - |
| CIL07_RS06725 (CIL07_06725) | - | 1391639..1391818 (-) | 180 | WP_003572193.1 | hypothetical protein | - |
| CIL07_RS06730 (CIL07_06730) | - | 1391819..1392577 (-) | 759 | WP_010493122.1 | ORF6N domain-containing protein | - |
| CIL07_RS06735 (CIL07_06735) | - | 1392638..1393471 (+) | 834 | WP_003586916.1 | TIGR02391 family protein | - |
| CIL07_RS06740 (CIL07_06740) | - | 1393442..1393642 (-) | 201 | WP_003572187.1 | hypothetical protein | - |
| CIL07_RS06745 (CIL07_06745) | - | 1393684..1393932 (-) | 249 | WP_003574003.1 | hypothetical protein | - |
| CIL07_RS06750 (CIL07_06750) | - | 1394176..1394529 (+) | 354 | WP_003572184.1 | helix-turn-helix domain-containing protein | - |
| CIL07_RS06755 (CIL07_06755) | - | 1394522..1394944 (+) | 423 | WP_003572182.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CIL07_RS06760 (CIL07_06760) | - | 1395103..1395810 (+) | 708 | WP_003586913.1 | zinc ribbon domain-containing protein | - |
| CIL07_RS06765 (CIL07_06765) | - | 1396060..1396239 (+) | 180 | WP_016365098.1 | hypothetical protein | - |
| CIL07_RS06770 (CIL07_06770) | - | 1396223..1396843 (-) | 621 | WP_003586911.1 | hypothetical protein | - |
| CIL07_RS06775 (CIL07_06775) | - | 1397036..1397956 (+) | 921 | WP_003574021.1 | IS30 family transposase | - |
| CIL07_RS06780 (CIL07_06780) | - | 1397987..1398247 (+) | 261 | WP_003606553.1 | hypothetical protein | - |
| CIL07_RS06785 (CIL07_06785) | - | 1398360..1399529 (+) | 1170 | WP_003569067.1 | site-specific integrase | - |
| CIL07_RS06795 (CIL07_06795) | - | 1399850..1400395 (+) | 546 | WP_003604444.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 730 a.a. Molecular weight: 81290.50 Da Isoelectric Point: 7.0227
>NTDB_id=1039147 CIL07_RS06580 WP_100908635.1 1367897..1370089(-) (comA) [Lacticaseibacillus paracasei subsp. paracasei strain NTU 101]
MIKYNLKLGQAQYYKRYYTPQVDERDCGVAALNMLLQFNGSDYSLAHLRQLAKTDQEGTTALGIVRAAQALHFETKAVKA
DMTLFDLDDVPYPFLVHVLKRGELLHYYVVFKATKDHILIGDPDSSVAMTWLPKERFAKEWSGVAIFIAPEPQYQPRKED
KGSLFAFVPMLARQKGIIANIIVAAVLITLISIVGSYFLQSIIDTYIPNGMRTTLGMIASGLILAYVLQSVLTYGQNFLM
AVLGQRLSIDVILGYVRHLYELPMSFFSTRRTGEIVSRFSDANKIIDALANTIMTLFLDIWIVLILGIVLGIQNTTLFLV
SLIAVPCYLVIVFAFQRPFNRLNQETMESNAILSSSIIEDLNGIETIKSLTGEKVSYERVDREFVTYLKKSFNYTKADQL
QQAIKGLLKLVLNVVVLWIGASLVMANKMSLGQMLTFNALLAYFTNPLESIINLQPKLQMAKVANNRLNEVYLVESEFKE
QRSLNDRHLIDGAINVTDVSFKYGFGQDVLKQINLEIPENAKYTIVGMSGSGKSTLAKLLVGFYPVDTGKGKITFNGVPI
SDVDLTTLRQYIEYVPQDPFIFSGSVIENLTLGSRSNITEADIEAACSVAEIAGDISNLPQIWQTKLSESGSILSGGQKQ
RLAIARALLSPAKVLIFDESTSSLDTITERKIVDRLLAMTDRTIIFVAHRLTIAAKTEQIVVMDHGAIVEQGNHAELLAK
QGYYARLVSE
MIKYNLKLGQAQYYKRYYTPQVDERDCGVAALNMLLQFNGSDYSLAHLRQLAKTDQEGTTALGIVRAAQALHFETKAVKA
DMTLFDLDDVPYPFLVHVLKRGELLHYYVVFKATKDHILIGDPDSSVAMTWLPKERFAKEWSGVAIFIAPEPQYQPRKED
KGSLFAFVPMLARQKGIIANIIVAAVLITLISIVGSYFLQSIIDTYIPNGMRTTLGMIASGLILAYVLQSVLTYGQNFLM
AVLGQRLSIDVILGYVRHLYELPMSFFSTRRTGEIVSRFSDANKIIDALANTIMTLFLDIWIVLILGIVLGIQNTTLFLV
SLIAVPCYLVIVFAFQRPFNRLNQETMESNAILSSSIIEDLNGIETIKSLTGEKVSYERVDREFVTYLKKSFNYTKADQL
QQAIKGLLKLVLNVVVLWIGASLVMANKMSLGQMLTFNALLAYFTNPLESIINLQPKLQMAKVANNRLNEVYLVESEFKE
QRSLNDRHLIDGAINVTDVSFKYGFGQDVLKQINLEIPENAKYTIVGMSGSGKSTLAKLLVGFYPVDTGKGKITFNGVPI
SDVDLTTLRQYIEYVPQDPFIFSGSVIENLTLGSRSNITEADIEAACSVAEIAGDISNLPQIWQTKLSESGSILSGGQKQ
RLAIARALLSPAKVLIFDESTSSLDTITERKIVDRLLAMTDRTIIFVAHRLTIAAKTEQIVVMDHGAIVEQGNHAELLAK
QGYYARLVSE
Nucleotide
Download Length: 2193 bp
>NTDB_id=1039147 CIL07_RS06580 WP_100908635.1 1367897..1370089(-) (comA) [Lacticaseibacillus paracasei subsp. paracasei strain NTU 101]
ATGATCAAATACAACCTAAAGCTCGGCCAAGCACAGTATTACAAGCGTTACTACACGCCTCAGGTGGATGAGCGCGATTG
CGGGGTTGCGGCGCTTAATATGCTGCTGCAATTTAATGGCTCGGATTATTCGCTAGCGCATCTGCGACAGTTGGCGAAGA
CGGATCAGGAAGGAACAACAGCGTTAGGGATTGTCCGAGCTGCTCAGGCACTTCATTTTGAAACCAAGGCTGTCAAGGCG
GATATGACGCTGTTTGATCTTGATGATGTTCCTTATCCGTTTCTTGTCCATGTTTTGAAGCGTGGCGAGTTGCTTCATTA
TTATGTGGTGTTTAAGGCGACAAAGGATCATATCTTGATTGGCGATCCTGATTCATCAGTAGCGATGACCTGGCTTCCCA
AAGAGCGCTTTGCGAAGGAGTGGTCGGGGGTCGCTATTTTTATTGCGCCAGAACCGCAATATCAACCACGCAAAGAGGAC
AAAGGCAGTCTCTTTGCGTTTGTGCCGATGCTAGCGCGACAAAAAGGAATCATTGCCAATATTATTGTCGCCGCTGTGTT
GATCACGTTGATTAGTATTGTCGGGTCTTATTTTCTTCAGTCGATTATTGATACTTATATTCCAAACGGGATGCGCACAA
CTTTGGGAATGATTGCCAGTGGTCTCATCCTCGCTTATGTGCTGCAGTCGGTTTTAACCTATGGGCAAAATTTTTTGATG
GCTGTTTTAGGACAACGTTTGTCGATTGATGTCATTTTGGGTTACGTCAGACACCTTTATGAATTACCTATGTCCTTCTT
TTCCACGCGTCGGACTGGGGAAATTGTGTCGCGGTTTTCCGATGCTAATAAAATTATTGATGCGCTGGCGAACACGATTA
TGACCTTGTTTCTTGATATTTGGATTGTCTTAATTTTAGGGATCGTGTTAGGCATTCAAAACACCACCTTATTCTTGGTG
TCTTTAATTGCTGTGCCTTGTTATTTGGTGATTGTGTTCGCTTTTCAGCGGCCATTTAATCGACTGAATCAAGAGACGAT
GGAAAGCAATGCCATTTTGAGTTCATCCATTATCGAGGATTTGAACGGGATTGAGACGATTAAATCACTGACCGGTGAGA
AAGTCAGTTATGAACGGGTTGACCGTGAATTCGTCACGTATTTGAAAAAGTCGTTCAATTATACAAAAGCCGATCAACTG
CAGCAGGCGATCAAGGGACTGCTGAAGTTGGTTTTGAATGTGGTCGTGCTGTGGATTGGTGCGAGTTTGGTGATGGCTAA
CAAGATGAGTCTAGGACAGATGCTGACGTTCAATGCGTTGTTGGCATATTTCACTAATCCGTTAGAAAGCATCATTAATT
TGCAACCAAAATTGCAAATGGCCAAAGTCGCGAATAACCGGCTGAATGAAGTGTATTTGGTTGAATCGGAGTTTAAAGAA
CAGCGAAGTTTGAATGATCGGCATTTAATTGATGGCGCTATCAATGTGACCGATGTGTCCTTTAAGTATGGTTTTGGGCA
AGATGTTTTGAAGCAAATCAATCTTGAAATCCCAGAGAATGCCAAATACACCATTGTCGGCATGAGTGGATCAGGGAAAT
CGACCTTAGCCAAGTTGCTAGTAGGTTTCTATCCAGTGGACACTGGCAAAGGGAAAATCACATTTAATGGGGTTCCAATC
AGTGATGTTGATCTAACAACGTTACGACAATATATCGAGTATGTACCACAAGATCCGTTTATTTTTTCTGGCTCAGTCAT
TGAAAACTTAACGTTGGGTAGCCGTTCGAATATCACTGAAGCCGATATTGAAGCTGCCTGTTCAGTGGCAGAAATTGCCG
GAGATATTTCGAATTTGCCGCAGATATGGCAGACCAAACTTTCTGAAAGCGGCAGTATTTTATCGGGTGGACAAAAGCAG
CGCCTAGCAATTGCCCGCGCGTTATTATCACCGGCAAAAGTGTTGATTTTTGATGAATCGACCAGCAGTTTAGATACGAT
CACCGAGCGAAAAATTGTTGATCGGTTGTTAGCAATGACTGATCGAACCATTATTTTTGTGGCTCATCGGCTGACCATTG
CTGCTAAAACGGAACAGATTGTGGTCATGGACCATGGTGCGATTGTTGAACAAGGAAATCATGCTGAGTTATTGGCCAAA
CAAGGCTATTATGCTCGGTTGGTAAGTGAGTGA
ATGATCAAATACAACCTAAAGCTCGGCCAAGCACAGTATTACAAGCGTTACTACACGCCTCAGGTGGATGAGCGCGATTG
CGGGGTTGCGGCGCTTAATATGCTGCTGCAATTTAATGGCTCGGATTATTCGCTAGCGCATCTGCGACAGTTGGCGAAGA
CGGATCAGGAAGGAACAACAGCGTTAGGGATTGTCCGAGCTGCTCAGGCACTTCATTTTGAAACCAAGGCTGTCAAGGCG
GATATGACGCTGTTTGATCTTGATGATGTTCCTTATCCGTTTCTTGTCCATGTTTTGAAGCGTGGCGAGTTGCTTCATTA
TTATGTGGTGTTTAAGGCGACAAAGGATCATATCTTGATTGGCGATCCTGATTCATCAGTAGCGATGACCTGGCTTCCCA
AAGAGCGCTTTGCGAAGGAGTGGTCGGGGGTCGCTATTTTTATTGCGCCAGAACCGCAATATCAACCACGCAAAGAGGAC
AAAGGCAGTCTCTTTGCGTTTGTGCCGATGCTAGCGCGACAAAAAGGAATCATTGCCAATATTATTGTCGCCGCTGTGTT
GATCACGTTGATTAGTATTGTCGGGTCTTATTTTCTTCAGTCGATTATTGATACTTATATTCCAAACGGGATGCGCACAA
CTTTGGGAATGATTGCCAGTGGTCTCATCCTCGCTTATGTGCTGCAGTCGGTTTTAACCTATGGGCAAAATTTTTTGATG
GCTGTTTTAGGACAACGTTTGTCGATTGATGTCATTTTGGGTTACGTCAGACACCTTTATGAATTACCTATGTCCTTCTT
TTCCACGCGTCGGACTGGGGAAATTGTGTCGCGGTTTTCCGATGCTAATAAAATTATTGATGCGCTGGCGAACACGATTA
TGACCTTGTTTCTTGATATTTGGATTGTCTTAATTTTAGGGATCGTGTTAGGCATTCAAAACACCACCTTATTCTTGGTG
TCTTTAATTGCTGTGCCTTGTTATTTGGTGATTGTGTTCGCTTTTCAGCGGCCATTTAATCGACTGAATCAAGAGACGAT
GGAAAGCAATGCCATTTTGAGTTCATCCATTATCGAGGATTTGAACGGGATTGAGACGATTAAATCACTGACCGGTGAGA
AAGTCAGTTATGAACGGGTTGACCGTGAATTCGTCACGTATTTGAAAAAGTCGTTCAATTATACAAAAGCCGATCAACTG
CAGCAGGCGATCAAGGGACTGCTGAAGTTGGTTTTGAATGTGGTCGTGCTGTGGATTGGTGCGAGTTTGGTGATGGCTAA
CAAGATGAGTCTAGGACAGATGCTGACGTTCAATGCGTTGTTGGCATATTTCACTAATCCGTTAGAAAGCATCATTAATT
TGCAACCAAAATTGCAAATGGCCAAAGTCGCGAATAACCGGCTGAATGAAGTGTATTTGGTTGAATCGGAGTTTAAAGAA
CAGCGAAGTTTGAATGATCGGCATTTAATTGATGGCGCTATCAATGTGACCGATGTGTCCTTTAAGTATGGTTTTGGGCA
AGATGTTTTGAAGCAAATCAATCTTGAAATCCCAGAGAATGCCAAATACACCATTGTCGGCATGAGTGGATCAGGGAAAT
CGACCTTAGCCAAGTTGCTAGTAGGTTTCTATCCAGTGGACACTGGCAAAGGGAAAATCACATTTAATGGGGTTCCAATC
AGTGATGTTGATCTAACAACGTTACGACAATATATCGAGTATGTACCACAAGATCCGTTTATTTTTTCTGGCTCAGTCAT
TGAAAACTTAACGTTGGGTAGCCGTTCGAATATCACTGAAGCCGATATTGAAGCTGCCTGTTCAGTGGCAGAAATTGCCG
GAGATATTTCGAATTTGCCGCAGATATGGCAGACCAAACTTTCTGAAAGCGGCAGTATTTTATCGGGTGGACAAAAGCAG
CGCCTAGCAATTGCCCGCGCGTTATTATCACCGGCAAAAGTGTTGATTTTTGATGAATCGACCAGCAGTTTAGATACGAT
CACCGAGCGAAAAATTGTTGATCGGTTGTTAGCAATGACTGATCGAACCATTATTTTTGTGGCTCATCGGCTGACCATTG
CTGCTAAAACGGAACAGATTGTGGTCATGGACCATGGTGCGATTGTTGAACAAGGAAATCATGCTGAGTTATTGGCCAAA
CAAGGCTATTATGCTCGGTTGGTAAGTGAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comA | Streptococcus mitis NCTC 12261 |
58.774 |
98.356 |
0.578 |
| comA | Streptococcus pneumoniae Rx1 |
58.217 |
98.356 |
0.573 |
| comA | Streptococcus pneumoniae D39 |
58.217 |
98.356 |
0.573 |
| comA | Streptococcus pneumoniae R6 |
58.217 |
98.356 |
0.573 |
| comA | Streptococcus mitis SK321 |
58.078 |
98.356 |
0.571 |
| comA | Streptococcus pneumoniae TIGR4 |
57.799 |
98.356 |
0.568 |
| comA | Streptococcus gordonii str. Challis substr. CH1 |
56.964 |
98.356 |
0.56 |
| comA/nlmT | Streptococcus mutans UA159 |
54.848 |
98.904 |
0.542 |