Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACCP96_RS01510 Genome accession   NZ_CP167226
Coordinates   361427..362947 (-) Length   506 a.a.
NCBI ID   WP_372157522.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. fici strain NCPPB 3886     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 356427..367947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCP96_RS01490 (ACCP96_01490) - 357051..358172 (+) 1122 WP_122273153.1 acyl-CoA desaturase -
  ACCP96_RS01495 (ACCP96_01495) - 358236..359798 (-) 1563 WP_372157520.1 EAL domain-containing protein -
  ACCP96_RS01500 (ACCP96_01500) - 360178..360354 (+) 177 WP_008574834.1 hypothetical protein -
  ACCP96_RS01505 (ACCP96_01505) - 360578..361087 (-) 510 WP_008574836.1 lipocalin family protein -
  ACCP96_RS01510 (ACCP96_01510) comM 361427..362947 (-) 1521 WP_372157522.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACCP96_RS01515 (ACCP96_01515) - 362963..363241 (-) 279 WP_008574840.1 accessory factor UbiK family protein -
  ACCP96_RS01520 (ACCP96_01520) - 363395..363769 (+) 375 WP_008574841.1 P-II family nitrogen regulator -
  ACCP96_RS01525 (ACCP96_01525) - 364246..366231 (+) 1986 WP_008574843.1 beta-N-acetylglucosaminidase domain-containing protein -
  ACCP96_RS01530 (ACCP96_01530) - 366435..367091 (-) 657 WP_014091297.1 RIO1 family regulatory kinase/ATPase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53868.57 Da        Isoelectric Point: 8.1604

>NTDB_id=1038972 ACCP96_RS01510 WP_372157522.1 361427..362947(-) (comM) [Xanthomonas campestris pv. fici strain NCPPB 3886]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKEGGR
FDLPIALGILAASGQIDRQALADYEFLGELALTGELRGVDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVEAFTARTL
LDVCATLNGSQKAPAAELAVQALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPGLLPEASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLSHNGVLFLDELPEWQRQTLEVLREPLE
SGVVTIARAARSVDFPARFHLVAAMNPCPCGWAGDGSGRCRCSSDSIRRYRSRISGPLLDRIDLHVEVPRLPPQALRSGN
LGEDSASVRARVVAARQRQLARGALPNAQLDQADTDRHCRLQHDDQVLLERAIEHLQLSARSMHRILRVARTIADLDDSP
DIATPHLTEAIGYRKLDRALGTASAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1038972 ACCP96_RS01510 WP_372157522.1 361427..362947(-) (comM) [Xanthomonas campestris pv. fici strain NCPPB 3886]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGGGTGCATGCGCCTGAGGTTCGGGTGGAAGTGCATCTCTCCGG
CGGTCTTCCTTCCACCCAGATCGTGGGCCTGCCCGAAGCGGCAGTGCGCGAATCGCGCGAACGCGTGCGTGCCGCCCTGC
TGTGCGCACAGTTCGAATTTCCCGCCCGGCGCATCACCATCAACCTGGCACCGGCCGATTTACCGAAAGAAGGCGGCCGG
TTCGATCTGCCGATCGCCCTCGGTATCCTGGCTGCCAGCGGGCAGATCGACCGCCAGGCCCTGGCCGATTACGAATTCCT
CGGCGAGCTTGCGCTGACCGGCGAGCTGCGCGGCGTCGACGGCGTGCTGCCCGCGGCGCTGGCGGCCGCGCAGGCCGGAC
GACGGCTGATCGTCCCGCTCGCCAACGGTGCCGAAGCGGCCATCGCCGGACACGTCGAAGCCTTCACCGCGCGTACCCTG
CTGGATGTCTGCGCGACGCTCAACGGCAGCCAGAAAGCGCCCGCCGCCGAGCTGGCAGTGCAGGCGCTCGGCGCCCGCGC
CCTGCCCGACATGGCCGACGTGCGCGGGCAACCGCACGCCCGCCGCGCGCTGGAGATCGCCGCTGCCGGTGGGCACCACC
TGTTGCTGGTCGGCAGCCCTGGCTGCGGCAAGACCCTGCTGGCCTCGCGCCTGCCCGGTCTATTGCCCGAAGCCAGCGAA
GCAGAAGCACTGGAAACCGCTGCGATCACCTCGATCAGCGGCCGTGGGCTGGATCTGGCCCGCTGGCGGCAACGCCCCTA
CCGCGCCCCGCACCACACCGCCAGCGCAGTGGCCCTGGTCGGCGGCGGCACGCACCCGCGCCCCGGCGAGATCTCGCTGT
CTCACAACGGCGTGCTGTTCCTGGACGAATTGCCCGAGTGGCAACGGCAAACCCTGGAAGTGTTGCGCGAGCCCTTGGAG
TCGGGCGTGGTCACGATCGCGCGCGCGGCACGCAGCGTGGATTTTCCGGCGCGCTTTCACTTGGTCGCCGCCATGAATCC
CTGCCCGTGCGGCTGGGCAGGCGATGGCAGCGGGCGCTGCCGCTGCAGCAGCGACAGCATCCGTCGCTACCGCAGCCGCA
TCTCCGGCCCATTGCTGGACCGTATCGATCTGCATGTCGAAGTGCCGCGCCTCCCTCCGCAGGCGCTGCGCAGCGGCAAC
CTCGGTGAAGACAGCGCCAGCGTGCGTGCCCGCGTGGTCGCCGCGCGACAGCGACAGCTTGCACGCGGTGCGCTGCCCAA
TGCGCAACTGGACCAGGCCGACACCGACCGCCATTGCCGCCTGCAACACGACGATCAGGTGCTGCTGGAGCGCGCCATCG
AACACCTGCAGCTGTCCGCACGCTCGATGCATCGCATCCTGCGCGTTGCGCGCACCATCGCCGATCTCGACGACAGCCCA
GACATCGCCACACCCCATCTCACCGAAGCGATCGGCTACCGCAAACTGGATCGTGCGCTTGGCACCGCCAGCGCGGCGTA
G

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.126

100

0.561
  comM Haemophilus influenzae Rd KW20

55.186

100

0.557
  comM Glaesserella parasuis strain SC1401

53.846

100

0.54
  comM Vibrio campbellii strain DS40M4

53.755

100

0.538
  comM Legionella pneumophila str. Paris

51.308

98.221

0.504
  comM Legionella pneumophila strain ERS1305867

51.308

98.221

0.504
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.276

100

0.455

Multiple sequence alignment