Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACCP93_RS19125 Genome accession   NZ_CP167216
Coordinates   4394539..4396059 (+) Length   506 a.a.
NCBI ID   WP_218559265.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. fici strain NCPPB 2372     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4389539..4401059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCP93_RS19105 (ACCP93_19105) - 4390405..4391061 (+) 657 WP_014091297.1 RIO1 family regulatory kinase/ATPase -
  ACCP93_RS19110 (ACCP93_19110) - 4391265..4393250 (-) 1986 WP_008574843.1 beta-N-acetylglucosaminidase domain-containing protein -
  ACCP93_RS19115 (ACCP93_19115) - 4393717..4394091 (-) 375 WP_008574841.1 P-II family nitrogen regulator -
  ACCP93_RS19120 (ACCP93_19120) - 4394245..4394523 (+) 279 WP_008574840.1 accessory factor UbiK family protein -
  ACCP93_RS19125 (ACCP93_19125) comM 4394539..4396059 (+) 1521 WP_218559265.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACCP93_RS19130 (ACCP93_19130) - 4396399..4396908 (+) 510 WP_008574836.1 lipocalin family protein -
  ACCP93_RS19135 (ACCP93_19135) - 4397132..4397308 (-) 177 WP_008574834.1 hypothetical protein -
  ACCP93_RS19140 (ACCP93_19140) - 4397688..4399250 (+) 1563 WP_218559266.1 EAL domain-containing protein -
  ACCP93_RS19145 (ACCP93_19145) - 4399314..4400435 (-) 1122 WP_122273153.1 acyl-CoA desaturase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53907.64 Da        Isoelectric Point: 8.3394

>NTDB_id=1038917 ACCP93_RS19125 WP_218559265.1 4394539..4396059(+) (comM) [Xanthomonas campestris pv. fici strain NCPPB 2372]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKEGGR
FDLPIALGILAASGQIDRQALADYEFLGELALTGELRGVDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVEAFTARTL
LDVCATLNGSQKAPAAELAVQALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPGLLPEASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLSHNGVLFLDELPEWQRQTLEVLREPLE
SGVVTIARAARSVDFPARFQLVAAMNPCPCGWAGDGSGRCRCSSDSIRRYRSRISGPLLDRIDLHVEVPRLPPQALRSGN
LGEDSASVRARVVAARQRQLARGALPNAQLDQADTDRHCRLQHDDQVLLERAIEHLQLSARSMHRILRVARTIADLDDSP
YIATPHLTEAIGYRKLDRALGTASAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1038917 ACCP93_RS19125 WP_218559265.1 4394539..4396059(+) (comM) [Xanthomonas campestris pv. fici strain NCPPB 2372]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGGGTGCATGCGCCTGAGGTTCGGGTGGAAGTGCATCTCTCCGG
CGGTCTTCCTTCCACCCAGATCGTGGGCCTGCCCGAAGCGGCAGTGCGCGAATCGCGCGAACGCGTGCGTGCCGCCCTGC
TGTGCGCACAGTTCGAATTTCCCGCCCGGCGCATCACCATCAACCTGGCACCGGCCGATTTACCGAAAGAAGGCGGCCGG
TTCGATCTGCCGATCGCCCTCGGTATCCTGGCTGCCAGCGGGCAAATCGACCGCCAGGCCCTGGCCGATTACGAATTCCT
CGGCGAGCTTGCGCTGACCGGCGAGCTGCGCGGCGTCGACGGCGTGCTGCCCGCGGCGCTGGCGGCCGCGCAGGCCGGAC
GACGGCTGATCGTCCCGCTCGCCAACGGTGCCGAAGCGGCCATCGCCGGACACGTCGAAGCCTTCACCGCGCGTACCCTG
CTGGATGTCTGCGCCACGCTCAACGGCAGCCAGAAAGCGCCCGCCGCCGAGCTGGCAGTGCAGGCGCTCGGCGCCCGCGC
CCTGCCCGACATGGCCGACGTGCGCGGGCAACCGCACGCCCGCCGCGCGCTGGAGATCGCCGCTGCCGGTGGTCACCACC
TGTTGCTGGTCGGCAGCCCTGGCTGCGGCAAGACCCTGCTGGCCTCGCGCCTGCCCGGTCTATTGCCCGAAGCCAGCGAA
GCAGAAGCACTGGAAACCGCTGCGATCACCTCGATCAGCGGCCGTGGGCTGGATCTGGCCCGCTGGCGGCAACGCCCCTA
CCGCGCCCCGCACCACACCGCCAGCGCAGTGGCCCTGGTCGGCGGCGGCACGCACCCGCGCCCCGGCGAGATCTCGCTGT
CTCACAACGGCGTGCTGTTCCTGGACGAATTGCCCGAGTGGCAACGGCAAACCCTGGAAGTGTTGCGCGAGCCCTTGGAG
TCGGGCGTGGTCACGATCGCGCGCGCGGCACGCAGCGTGGATTTTCCGGCGCGCTTTCAATTGGTCGCCGCCATGAATCC
CTGCCCGTGCGGCTGGGCAGGCGATGGCAGCGGGCGCTGCCGCTGCAGCAGCGACAGCATCCGTCGCTACCGCAGCCGCA
TCTCCGGCCCGTTGCTGGACCGTATCGATCTGCATGTCGAAGTGCCGCGCCTCCCTCCGCAGGCGCTGCGCAGCGGCAAC
CTCGGTGAAGACAGCGCCAGCGTGCGTGCCCGCGTGGTCGCCGCGCGACAGCGACAGCTTGCACGCGGTGCGCTGCCCAA
TGCGCAACTGGACCAGGCCGACACCGACCGCCATTGCCGCCTGCAACACGACGATCAGGTGCTGCTGGAGCGCGCCATCG
AACACCTGCAGCTGTCCGCACGCTCGATGCATCGCATCCTGCGCGTTGCGCGCACCATCGCCGATCTCGACGACAGCCCA
TACATCGCCACACCCCATCTCACCGAAGCGATCGGCTACCGCAAACTGGATCGTGCGCTTGGCACCGCCAGCGCGGCGTA
G

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.324

100

0.563
  comM Haemophilus influenzae Rd KW20

55.382

100

0.559
  comM Glaesserella parasuis strain SC1401

54.043

100

0.541
  comM Vibrio campbellii strain DS40M4

53.953

100

0.54
  comM Legionella pneumophila str. Paris

51.509

98.221

0.506
  comM Legionella pneumophila strain ERS1305867

51.509

98.221

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.276

100

0.455

Multiple sequence alignment