Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   ACBW56_RS01825 Genome accession   NZ_CP167196
Coordinates   348551..348886 (-) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain FRI-TD24     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 343551..353886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACBW56_RS01775 (ACBW56_01775) comGC 343785..344051 (+) 267 WP_042635730.1 competence type IV pilus major pilin ComGC Machinery gene
  ACBW56_RS01780 (ACBW56_01780) comGD 344041..344478 (+) 438 WP_072588444.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACBW56_RS01785 (ACBW56_01785) comGE 344462..344776 (+) 315 WP_015388003.1 competence type IV pilus minor pilin ComGE Machinery gene
  ACBW56_RS01790 (ACBW56_01790) comGF 344790..345185 (+) 396 WP_003153090.1 competence type IV pilus minor pilin ComGF -
  ACBW56_RS01795 (ACBW56_01795) comGG 345186..345563 (+) 378 WP_014305410.1 competence type IV pilus minor pilin ComGG Machinery gene
  ACBW56_RS01800 (ACBW56_01800) - 345620..345799 (+) 180 WP_003153093.1 YqzE family protein -
  ACBW56_RS01805 (ACBW56_01805) - 345839..346168 (-) 330 WP_003153097.1 DUF3889 domain-containing protein -
  ACBW56_RS01810 (ACBW56_01810) tapA 346427..347098 (+) 672 WP_330729170.1 amyloid fiber anchoring/assembly protein TapA -
  ACBW56_RS01815 (ACBW56_01815) sipW 347070..347654 (+) 585 WP_012117977.1 signal peptidase I SipW -
  ACBW56_RS01820 (ACBW56_01820) tasA 347718..348503 (+) 786 WP_003153102.1 biofilm matrix protein TasA -
  ACBW56_RS01825 (ACBW56_01825) sinR 348551..348886 (-) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  ACBW56_RS01830 (ACBW56_01830) sinI 348920..349093 (-) 174 WP_003153105.1 anti-repressor SinI Regulator
  ACBW56_RS01835 (ACBW56_01835) - 349270..350064 (-) 795 WP_003153106.1 YqhG family protein -
  ACBW56_RS01840 (ACBW56_01840) - 350082..351752 (-) 1671 WP_003153107.1 DEAD/DEAH box helicase -
  ACBW56_RS01845 (ACBW56_01845) gcvT 352175..353275 (+) 1101 WP_003153108.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=1038747 ACBW56_RS01825 WP_003153104.1 348551..348886(-) (sinR) [Bacillus velezensis strain FRI-TD24]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1038747 ACBW56_RS01825 WP_003153104.1 348551..348886(-) (sinR) [Bacillus velezensis strain FRI-TD24]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment