Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   ACBW56_RS01765 Genome accession   NZ_CP167196
Coordinates   341645..342715 (+) Length   356 a.a.
NCBI ID   WP_003153083.1    Uniprot ID   -
Organism   Bacillus velezensis strain FRI-TD24     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 336645..347715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACBW56_RS01735 (ACBW56_01735) - 337119..337364 (-) 246 WP_003153078.1 DUF2626 domain-containing protein -
  ACBW56_RS01740 (ACBW56_01740) - 337601..337981 (+) 381 WP_003153079.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  ACBW56_RS01750 (ACBW56_01750) - 338187..339017 (+) 831 WP_025852928.1 STAS domain-containing protein -
  ACBW56_RS01755 (ACBW56_01755) - 339056..340357 (-) 1302 WP_014305416.1 hemolysin family protein -
  ACBW56_RS01760 (ACBW56_01760) - 340503..341453 (+) 951 WP_003153082.1 magnesium transporter CorA family protein -
  ACBW56_RS01765 (ACBW56_01765) comGA 341645..342715 (+) 1071 WP_003153083.1 competence type IV pilus ATPase ComGA Machinery gene
  ACBW56_RS01770 (ACBW56_01770) comGB 342702..343738 (+) 1037 Protein_349 competence type IV pilus assembly protein ComGB -
  ACBW56_RS01775 (ACBW56_01775) comGC 343785..344051 (+) 267 WP_042635730.1 competence type IV pilus major pilin ComGC Machinery gene
  ACBW56_RS01780 (ACBW56_01780) comGD 344041..344478 (+) 438 WP_072588444.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACBW56_RS01785 (ACBW56_01785) comGE 344462..344776 (+) 315 WP_015388003.1 competence type IV pilus minor pilin ComGE Machinery gene
  ACBW56_RS01790 (ACBW56_01790) comGF 344790..345185 (+) 396 WP_003153090.1 competence type IV pilus minor pilin ComGF -
  ACBW56_RS01795 (ACBW56_01795) comGG 345186..345563 (+) 378 WP_014305410.1 competence type IV pilus minor pilin ComGG Machinery gene
  ACBW56_RS01800 (ACBW56_01800) - 345620..345799 (+) 180 WP_003153093.1 YqzE family protein -
  ACBW56_RS01805 (ACBW56_01805) - 345839..346168 (-) 330 WP_003153097.1 DUF3889 domain-containing protein -
  ACBW56_RS01810 (ACBW56_01810) tapA 346427..347098 (+) 672 WP_330729170.1 amyloid fiber anchoring/assembly protein TapA -
  ACBW56_RS01815 (ACBW56_01815) sipW 347070..347654 (+) 585 WP_012117977.1 signal peptidase I SipW -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40529.85 Da        Isoelectric Point: 9.4729

>NTDB_id=1038742 ACBW56_RS01765 WP_003153083.1 341645..342715(+) (comGA) [Bacillus velezensis strain FRI-TD24]
MKNIETYSRNIINEAYTARASDIHIVPREKDAFIHFRIGHALVKKRVLKKEECVRLISHFKFLSAMDIGERRKPQNGSLS
LPLPTETVHLRMSTLPTMNDESLVIRLLPKRQIPPLDKLSLFRGAGAALLSFLKHSHGLLLFTGPTGSGKTTTLYSLVNY
AKRHFNRRIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLSSLH
TRDAKGAIYRLLEFGVNMTEIEQTVIAIAAQRLVDLTCPFCKEENCSVYCRMYRQTRRAGIYELLYGKNLTQCFQEAKGE
HANFQYQTLRRLIRKGIALGYVTTDNYDRWVYHEAD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1038742 ACBW56_RS01765 WP_003153083.1 341645..342715(+) (comGA) [Bacillus velezensis strain FRI-TD24]
GTGAAAAATATTGAAACATACAGCAGGAACATCATAAACGAGGCCTATACGGCAAGGGCTTCAGATATACACATTGTGCC
GAGAGAAAAGGATGCTTTCATTCATTTTCGCATCGGCCATGCTCTTGTGAAAAAAAGAGTCTTAAAAAAAGAGGAATGCG
TAAGGCTTATTTCTCATTTCAAGTTTTTATCGGCCATGGATATAGGAGAAAGACGTAAGCCGCAAAACGGTTCATTGTCT
CTGCCGCTTCCGACGGAAACCGTTCATTTGAGAATGTCAACCTTGCCGACAATGAATGATGAAAGTCTTGTCATCAGGCT
TTTGCCTAAGCGGCAGATTCCCCCTCTGGATAAACTGTCCTTATTTCGGGGGGCGGGCGCCGCACTATTGTCCTTTCTGA
AGCATTCACACGGCCTGCTTCTGTTTACCGGCCCGACCGGCTCTGGAAAAACGACCACTCTTTACTCGCTTGTCAACTAT
GCAAAACGGCATTTCAACCGGCGGATTGTCACGCTTGAAGACCCCGTAGAAACAAGAGATGAGGATGTGTTGCAAGTTCA
GGTGAATGAAAAAGCCGGAGTCACATATTCCGCCGGTTTAAAAGCGATTTTAAGACATGATCCCGATATGATCATCTTAG
GGGAAATCAGAGATGCCGAAACGGCTGAAATCGCAGTCCGCGCGGCCATGACGGGACACCTCGTTCTTTCAAGCCTGCAT
ACAAGAGATGCTAAGGGCGCCATATACAGGCTGCTGGAGTTTGGGGTGAACATGACAGAAATTGAACAAACCGTCATTGC
CATTGCCGCTCAGCGTCTGGTTGATTTAACATGTCCGTTCTGCAAAGAGGAAAACTGTTCCGTGTACTGCCGGATGTACA
GGCAGACCCGCCGTGCGGGCATTTATGAACTGCTCTACGGGAAAAACCTCACCCAATGCTTTCAGGAAGCAAAGGGAGAG
CACGCCAATTTTCAATATCAGACGCTCCGCAGGCTGATCAGAAAAGGAATCGCGCTCGGCTATGTCACAACCGACAATTA
CGATCGGTGGGTGTATCATGAAGCGGATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

82.022

100

0.82
  pilB Glaesserella parasuis strain SC1401

38.793

97.753

0.379
  pilF Thermus thermophilus HB27

37.892

98.596

0.374

Multiple sequence alignment