Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACBZ91_RS10965 Genome accession   NZ_CP167179
Coordinates   2338986..2339525 (-) Length   179 a.a.
NCBI ID   WP_014233117.1    Uniprot ID   A0AAN1CWJ2
Organism   Vibrio natriegens strain JSH01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2333986..2344525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACBZ91_RS10945 (ACBZ91_10945) - 2334310..2334642 (-) 333 WP_065297432.1 MSHA biogenesis protein MshK -
  ACBZ91_RS10950 (ACBZ91_10950) gspM 2334635..2335285 (-) 651 WP_065300270.1 type II secretion system protein GspM -
  ACBZ91_RS10955 (ACBZ91_10955) - 2335282..2336727 (-) 1446 WP_372377374.1 MSHA biogenesis protein MshI -
  ACBZ91_RS10960 (ACBZ91_10960) csrD 2336739..2338748 (-) 2010 WP_372377375.1 RNase E specificity factor CsrD -
  ACBZ91_RS10965 (ACBZ91_10965) ssb 2338986..2339525 (-) 540 WP_014233117.1 single-stranded DNA-binding protein Machinery gene
  ACBZ91_RS10970 (ACBZ91_10970) qstR 2339803..2340447 (+) 645 WP_014233118.1 LuxR C-terminal-related transcriptional regulator Regulator
  ACBZ91_RS10975 (ACBZ91_10975) galU 2340627..2341499 (+) 873 WP_014233119.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  ACBZ91_RS10980 (ACBZ91_10980) uvrA 2341648..2344470 (+) 2823 WP_372377376.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19685.83 Da        Isoelectric Point: 5.2257

>NTDB_id=1038691 ACBZ91_RS10965 WP_014233117.1 2338986..2339525(-) (ssb) [Vibrio natriegens strain JSH01]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPAMGGQAPQQGGWGQPQQPAQPQYNAPQQQAPKQSAPQ
QPQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=1038691 ACBZ91_RS10965 WP_014233117.1 2338986..2339525(-) (ssb) [Vibrio natriegens strain JSH01]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAACCTAGGTAACGACCCTGAAATTCGTTACATGCCGAATGG
CGGTGCAGTAGCAAACATTACTATTGCAACCTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACTG
AGTGGCACCGAGTTGTGCTGTTTGGCAAACTTGCAGAAGTTGCTGGCGAATACCTACGTAAAGGCTCACAAGTTTACGTT
GAAGGACAACTTCAAACGCGTAAATGGCAAGATCAGAGTGGTCAAGACCGTTACTCAACTGAAGTTGTAGTTCAGGGCTT
CAATGGCGTAATGCAAATGCTGGGTGGTCGCGCTCAAGGTGGCGCTCCTGCTATGGGTGGCCAGGCACCTCAGCAAGGTG
GTTGGGGTCAGCCTCAGCAACCAGCTCAGCCGCAATACAATGCGCCTCAGCAACAGGCTCCAAAGCAATCTGCTCCACAG
CAGCCTCAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80.328

100

0.821
  ssb Glaesserella parasuis strain SC1401

56.614

100

0.598
  ssb Neisseria meningitidis MC58

46.667

100

0.469
  ssb Neisseria gonorrhoeae MS11

46.667

100

0.469

Multiple sequence alignment