Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   ACB339_RS08650 Genome accession   NZ_CP167023
Coordinates   1640987..1641538 (-) Length   183 a.a.
NCBI ID   WP_011106595.1    Uniprot ID   A0A5S4TPS4
Organism   Streptococcus pyogenes strain Isolate 3     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1635987..1646538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB339_RS08625 (ACB339_08620) - 1637353..1638198 (+) 846 WP_002982833.1 mechanosensitive ion channel family protein -
  ACB339_RS08630 (ACB339_08625) - 1638263..1638823 (-) 561 WP_002995157.1 TIGR01440 family protein -
  ACB339_RS08635 (ACB339_08630) - 1638837..1639307 (-) 471 WP_011106596.1 ECF transporter S component -
  ACB339_RS08640 (ACB339_08635) - 1639297..1640061 (-) 765 WP_002982821.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACB339_RS08645 (ACB339_08640) truA 1640051..1640800 (-) 750 WP_002995162.1 tRNA pseudouridine(38-40) synthase TruA -
  ACB339_RS08650 (ACB339_08645) comX/sigX/comX2/sigX2 1640987..1641538 (-) 552 WP_011106595.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 22309.13 Da        Isoelectric Point: 10.0375

>NTDB_id=1038044 ACB339_RS08650 WP_011106595.1 1640987..1641538(-) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain Isolate 3]
MSCCFFVVLFILGIVKKKRRLKMSIETRAVFEKVKPIILKLKRHYYIQLWDRDDWLQEGHIILLQLLERYPELIEEEERL
YRYFKTKFSSYLKDLLRRQESQKRQFHKLAYEEIGEVAHAIPSRGLWLDDYVAYQEVIASLENQLNSQERMQFQALIRGE
RFKGRRALLRKISPYFKEFAQQL

Nucleotide


Download         Length: 552 bp        

>NTDB_id=1038044 ACB339_RS08650 WP_011106595.1 1640987..1641538(-) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain Isolate 3]
ATGTCCTGTTGTTTTTTTGTGGTTCTCTTTATACTAGGGATAGTTAAAAAGAAAAGGAGACTCAAAATGTCGATAGAGAC
AAGAGCAGTGTTTGAAAAAGTTAAGCCCATTATTTTGAAATTAAAGCGACACTATTATATTCAATTGTGGGATAGAGATG
ACTGGTTACAAGAAGGACATATTATTTTATTACAGTTACTAGAAAGGTACCCAGAGTTAATTGAGGAAGAAGAGCGTTTA
TATCGCTATTTTAAAACAAAATTTTCATCTTATTTGAAAGATTTATTACGCCGTCAAGAAAGTCAAAAGCGTCAGTTCCA
TAAGTTAGCATATGAAGAGATAGGGGAGGTTGCACATGCCATTCCATCGAGAGGGTTATGGCTAGACGACTATGTGGCTT
ATCAAGAGGTAATAGCTAGCTTAGAGAACCAATTAAATTCGCAAGAGCGTATGCAGTTTCAAGCACTTATCAGGGGCGAA
CGTTTCAAGGGAAGACGTGCTCTACTTAGGAAGATCAGTCCCTATTTTAAGGAATTTGCACAGCAGTTGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5S4TPS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.