Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACB351_RS06395 Genome accession   NZ_CP167015
Coordinates   1261472..1261957 (-) Length   161 a.a.
NCBI ID   WP_371399953.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain Isolate 11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1256472..1266957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB351_RS06340 (ACB351_06340) terS 1257238..1257969 (-) 732 WP_371399947.1 phage terminase small subunit -
  ACB351_RS06355 (ACB351_06355) - 1258399..1258803 (-) 405 WP_371399948.1 DUF1492 domain-containing protein -
  ACB351_RS06360 (ACB351_06360) - 1258877..1259194 (-) 318 WP_000171789.1 hypothetical protein -
  ACB351_RS06365 (ACB351_06365) - 1259191..1259436 (-) 246 WP_001042651.1 hypothetical protein -
  ACB351_RS06370 (ACB351_06370) - 1259439..1259621 (-) 183 WP_371399949.1 hypothetical protein -
  ACB351_RS06375 (ACB351_06375) - 1259625..1259927 (-) 303 WP_371399950.1 DUF1372 family protein -
  ACB351_RS06380 (ACB351_06380) - 1259915..1260343 (-) 429 WP_371399951.1 RusA family crossover junction endodeoxyribonuclease -
  ACB351_RS06385 (ACB351_06385) - 1260340..1260672 (-) 333 WP_371399952.1 hypothetical protein -
  ACB351_RS06390 (ACB351_06390) - 1260650..1261463 (-) 814 Protein_1213 DNA methyltransferase -
  ACB351_RS06395 (ACB351_06395) ssb 1261472..1261957 (-) 486 WP_371399953.1 single-stranded DNA-binding protein Machinery gene
  ACB351_RS06400 (ACB351_06400) - 1262055..1262702 (-) 648 WP_371399954.1 hypothetical protein -
  ACB351_RS06405 (ACB351_06405) - 1262702..1263019 (-) 318 WP_371399955.1 hypothetical protein -
  ACB351_RS06410 (ACB351_06410) - 1263009..1264061 (-) 1053 WP_371399956.1 DUF1351 domain-containing protein -
  ACB351_RS06415 (ACB351_06415) bet 1264071..1264850 (-) 780 WP_371399957.1 phage recombination protein Bet -
  ACB351_RS06420 (ACB351_06420) - 1264847..1265026 (-) 180 WP_000373551.1 hypothetical protein -
  ACB351_RS06425 (ACB351_06425) - 1265030..1265152 (-) 123 WP_017827953.1 hypothetical protein -
  ACB351_RS06430 (ACB351_06430) - 1265163..1265420 (-) 258 WP_371399958.1 hypothetical protein -
  ACB351_RS06435 (ACB351_06435) - 1265420..1265689 (-) 270 WP_371399959.1 hypothetical protein -
  ACB351_RS06440 (ACB351_06440) - 1265927..1266301 (-) 375 WP_001163843.1 hypothetical protein -
  ACB351_RS06445 (ACB351_06445) - 1266312..1266470 (-) 159 WP_000834275.1 BOW99_gp33 family protein -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17255.92 Da        Isoelectric Point: 4.8778

>NTDB_id=1037594 ACB351_RS06395 WP_371399953.1 1261472..1261957(-) (ssb) [Streptococcus pyogenes strain Isolate 11]
MINNVVLVGRLTAAPDLRKTPSNVSALQGTLAVNRNFKNQNGEREADFINFQAWRGTADIIAEYCGKGSLIGLTGRIQVR
SYEKDGQRRYVTEVVADSVTLLESRGSQQGQSNKAQNGSQGGNFYPGGSPQSEFAGGTSGGYNSPFGDSNPMDISDDDLP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=1037594 ACB351_RS06395 WP_371399953.1 1261472..1261957(-) (ssb) [Streptococcus pyogenes strain Isolate 11]
ATGATTAACAATGTTGTGCTGGTTGGAAGACTGACAGCAGCTCCTGACCTACGCAAGACCCCTAGCAATGTCTCAGCATT
ACAGGGCACTCTTGCCGTCAATCGCAATTTCAAGAACCAAAACGGAGAACGTGAGGCTGACTTTATCAACTTTCAGGCTT
GGCGTGGTACGGCTGACATCATTGCTGAATATTGTGGCAAAGGGTCGCTCATTGGTCTTACTGGACGTATCCAGGTAAGG
AGCTACGAGAAAGACGGTCAGCGTCGATATGTGACTGAGGTTGTAGCTGATAGCGTGACTTTGTTAGAAAGCCGTGGCAG
TCAGCAAGGACAGTCAAACAAAGCTCAGAACGGCTCACAAGGTGGCAATTTCTATCCTGGCGGTTCTCCACAGTCTGAGT
TTGCTGGTGGCACATCAGGAGGTTACAACTCTCCATTTGGGGACTCAAACCCAATGGACATCTCAGATGATGACTTGCCT
TTCTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

48

100

0.522
  ssbA Bacillus subtilis subsp. subtilis str. 168

47.674

100

0.509
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.752

70.186

0.391
  ssbA Streptococcus mutans UA159

49.573

72.671

0.36
  ssbB Bacillus subtilis subsp. subtilis str. 168

52.252

68.944

0.36

Multiple sequence alignment