Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AB8617_RS11775 Genome accession   NZ_CP166995
Coordinates   2573694..2575208 (+) Length   504 a.a.
NCBI ID   WP_290040520.1    Uniprot ID   -
Organism   Psychromonas sp. GE-S-Ul-11     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2568694..2580208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8617_RS11760 (AB8617_11755) ilvM 2570618..2570869 (-) 252 WP_290040523.1 acetolactate synthase 2 small subunit -
  AB8617_RS11765 (AB8617_11760) ilvG 2570866..2572512 (-) 1647 WP_409439024.1 acetolactate synthase 2 catalytic subunit -
  AB8617_RS11770 (AB8617_11765) - 2572923..2573393 (-) 471 WP_290040521.1 hypothetical protein -
  AB8617_RS11775 (AB8617_11770) comM 2573694..2575208 (+) 1515 WP_290040520.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AB8617_RS11780 (AB8617_11775) - 2575220..2576116 (-) 897 WP_409439025.1 hypothetical protein -
  AB8617_RS11785 (AB8617_11780) - 2576390..2579248 (-) 2859 WP_409440405.1 valine--tRNA ligase -
  AB8617_RS11790 (AB8617_11785) - 2579248..2579724 (-) 477 WP_409439026.1 DNA polymerase III subunit chi -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54887.24 Da        Isoelectric Point: 7.0626

>NTDB_id=1036654 AB8617_RS11775 WP_290040520.1 2573694..2575208(+) (comM) [Psychromonas sp. GE-S-Ul-11]
MALARLVCRSISGVDAPEVEVEVHLGTGLPAFSLVGLPETSVKEAKDRVRSAILNSNYKFPSKRITVNLAPANLPKEGGR
FDLAIALGILLASEQLKCPEILQFECYGELSLSGELRHVDGIIPCALAAKEQQRQVIVCTENAHECALTGANGVVAHCLV
DVCAYLQQQLTLPPAEQDVTTSIEASSLDFSDVLGQEQAKRVLEVAAVGAHNLLLIGPPGTGKSMLAERFMTLLPNLEEH
QALQTAAVYSVCGKQRSDWFLPPYRAPHHSASAVALVGGGGKPKPGEISLSHHGVLFLDELAEFPRQVLDSLRQPMENHQ
VTISRAANQVTFPAHFQLIAAMNPSPCGHISGNLRRSTPDQILRYLGRLSGPFLDRFALAIMVPLLPKGLLADSQLGAKN
RIETSAEIKERVLAARHIQLTRQGKLNHYLSSQEVNQFCVLSKEDAVFLEQAIDKMGLSIRAWHSLLKVARSIADLQQQT
DISKAHLCEALNYRAMDRLLSSFN

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=1036654 AB8617_RS11775 WP_290040520.1 2573694..2575208(+) (comM) [Psychromonas sp. GE-S-Ul-11]
ATGGCATTAGCGAGGTTAGTATGTCGTTCTATTTCGGGAGTAGATGCTCCTGAAGTAGAGGTTGAAGTCCACCTTGGTAC
TGGGTTACCTGCTTTTTCATTAGTTGGATTACCTGAAACGTCAGTCAAAGAAGCAAAAGACCGAGTACGTAGTGCTATTT
TAAATAGTAATTACAAATTTCCGAGCAAGCGGATCACGGTGAACCTCGCTCCTGCTAACTTACCTAAAGAGGGGGGACGT
TTTGATTTAGCCATTGCTTTGGGTATTTTACTCGCCTCAGAGCAATTAAAGTGTCCTGAAATTCTACAATTTGAGTGTTA
TGGAGAGTTATCATTATCGGGAGAGTTACGCCATGTCGATGGCATTATCCCTTGTGCATTAGCCGCAAAAGAGCAACAAC
GACAAGTCATTGTGTGTACAGAAAATGCCCATGAATGTGCATTAACGGGAGCGAATGGTGTTGTTGCTCATTGTTTAGTT
GATGTCTGTGCCTATTTACAGCAACAGCTTACTTTGCCACCTGCTGAGCAAGATGTAACTACCAGCATCGAAGCTTCTTC
TCTAGACTTCAGTGATGTTCTTGGTCAGGAGCAAGCCAAGAGAGTGTTGGAAGTTGCAGCTGTTGGGGCGCATAATTTAC
TCTTAATTGGTCCTCCTGGTACTGGAAAAAGTATGTTAGCTGAACGTTTTATGACGTTGTTGCCTAACTTAGAGGAGCAT
CAAGCCTTACAAACTGCTGCTGTCTACTCGGTATGTGGCAAGCAACGGAGTGATTGGTTTTTACCACCGTACCGTGCTCC
TCACCATAGTGCTTCGGCAGTGGCGCTGGTGGGCGGAGGAGGTAAACCCAAGCCGGGAGAAATCTCATTATCGCATCATG
GGGTGTTGTTTTTAGATGAATTAGCTGAATTTCCCCGACAAGTCTTAGATAGTCTTCGTCAGCCGATGGAAAACCATCAA
GTTACTATTTCTCGTGCTGCAAACCAAGTAACTTTTCCTGCGCATTTTCAATTGATTGCAGCGATGAATCCTAGCCCTTG
TGGACATATTTCAGGTAATTTAAGGCGCAGTACGCCAGATCAAATATTACGCTATTTAGGACGTTTATCAGGCCCTTTCT
TAGATCGTTTTGCATTAGCTATTATGGTGCCGTTATTACCAAAAGGTTTATTAGCTGACTCACAACTAGGTGCAAAAAAT
AGAATAGAAACCAGTGCTGAAATCAAAGAGAGAGTATTAGCTGCTCGTCATATTCAGCTAACACGGCAAGGGAAATTAAA
TCATTATTTATCAAGTCAGGAAGTTAATCAATTTTGTGTATTAAGCAAAGAGGATGCTGTTTTTTTAGAGCAAGCGATTG
ATAAAATGGGATTATCTATTCGTGCTTGGCATAGCTTACTAAAAGTGGCCAGGAGTATTGCTGATCTTCAACAACAAACT
GATATATCTAAAGCCCACTTGTGCGAAGCATTAAACTATCGAGCAATGGATAGACTATTAAGTAGCTTCAACTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

54.403

100

0.552
  comM Glaesserella parasuis strain SC1401

53.953

100

0.542
  comM Vibrio campbellii strain DS40M4

53.649

100

0.54
  comM Vibrio cholerae strain A1552

52.86

100

0.532
  comM Legionella pneumophila str. Paris

50.497

99.802

0.504
  comM Legionella pneumophila strain ERS1305867

50.497

99.802

0.504
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.353

100

0.429

Multiple sequence alignment