Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   AB8616_RS11770 Genome accession   NZ_CP166994
Coordinates   2283881..2284153 (-) Length   90 a.a.
NCBI ID   WP_418139111.1    Uniprot ID   -
Organism   Marinomonas sp. RS-M-Aa-14     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2278881..2289153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8616_RS11745 (AB8616_11750) - 2279129..2279434 (-) 306 WP_418139052.1 hypothetical protein -
  AB8616_RS11750 (AB8616_11755) - 2279415..2279843 (-) 429 WP_418139053.1 ATP-binding cassette domain-containing protein -
  AB8616_RS11755 (AB8616_11760) thiP 2279830..2281467 (-) 1638 WP_265218520.1 thiamine/thiamine pyrophosphate ABC transporter permease -
  AB8616_RS11760 (AB8616_11765) thiB 2281443..2282276 (-) 834 WP_265218519.1 thiamine ABC transporter substrate binding subunit -
  AB8616_RS11765 (AB8616_11770) - 2282652..2283878 (-) 1227 WP_265218518.1 3-deoxy-D-manno-octulosonic acid transferase -
  AB8616_RS11770 (AB8616_11775) rcrQ 2283881..2284153 (-) 273 WP_418139111.1 hypothetical protein Regulator
  AB8616_RS11775 (AB8616_11780) - 2284172..2285670 (-) 1499 Protein_2298 ABC transporter transmembrane domain-containing protein -
  AB8616_RS11780 (AB8616_11785) hldE 2285671..2287098 (-) 1428 WP_265219389.1 bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE -
  AB8616_RS11785 (AB8616_11790) - 2287195..2288343 (+) 1149 WP_265218517.1 AGE family epimerase/isomerase -

Sequence

Protein


Download         Length: 90 a.a.        Molecular weight: 9710.88 Da        Isoelectric Point: 4.2527

>NTDB_id=1036624 AB8616_RS11770 WP_418139111.1 2283881..2284153(-) (rcrQ) [Marinomonas sp. RS-M-Aa-14]
MKNAPILILDEATSALDTESERAIQTALDGLMANRTTIAIAHRLSTIENADIIAVVDHGEIIEQGSHSELLAMNGAYAQL
HNQQFSETPV

Nucleotide


Download         Length: 273 bp        

>NTDB_id=1036624 AB8616_RS11770 WP_418139111.1 2283881..2284153(-) (rcrQ) [Marinomonas sp. RS-M-Aa-14]
TTGAAAAATGCGCCGATTCTTATTTTGGATGAAGCTACGTCGGCATTGGATACAGAGTCTGAGCGAGCGATTCAGACAGC
GTTGGATGGCCTGATGGCGAACCGCACGACCATTGCCATTGCGCATCGCCTATCGACCATCGAGAATGCTGATATTATCG
CGGTTGTGGATCATGGAGAAATTATTGAACAAGGTTCTCATAGTGAGTTATTGGCGATGAATGGCGCTTACGCTCAGCTT
CATAACCAGCAATTTAGTGAGACGCCTGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

62.069

96.667

0.6
  comA Streptococcus mitis SK321

49.398

92.222

0.456
  comA Streptococcus mitis NCTC 12261

49.398

92.222

0.456
  comA Streptococcus pneumoniae Rx1

48.193

92.222

0.444
  comA Streptococcus pneumoniae TIGR4

48.193

92.222

0.444
  comA Streptococcus pneumoniae D39

48.193

92.222

0.444
  comA Streptococcus pneumoniae R6

48.193

92.222

0.444
  comA/nlmT Streptococcus mutans UA159

48.78

91.111

0.444
  comA Streptococcus gordonii str. Challis substr. CH1

46.988

92.222

0.433
  rcrP Streptococcus mutans UA159

40.244

91.111

0.367

Multiple sequence alignment