Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACA097_RS13625 Genome accession   NZ_CP166971
Coordinates   2885010..2886497 (-) Length   495 a.a.
NCBI ID   WP_043256413.1    Uniprot ID   A0A024HQT8
Organism   Pseudomonas sp. QL9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2880010..2891497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACA097_RS13605 (ACA097_13600) - 2880865..2881785 (+) 921 WP_043257865.1 LysR substrate-binding domain-containing protein -
  ACA097_RS13610 (ACA097_13605) - 2882083..2883144 (+) 1062 WP_371370397.1 haloacid dehalogenase-like hydrolase -
  ACA097_RS13615 (ACA097_13610) - 2883163..2884608 (-) 1446 WP_160288763.1 PLP-dependent aminotransferase family protein -
  ACA097_RS13620 (ACA097_13615) - 2884783..2885013 (+) 231 WP_043256415.1 DUF1127 domain-containing protein -
  ACA097_RS13625 (ACA097_13620) comM 2885010..2886497 (-) 1488 WP_043256413.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACA097_RS13630 (ACA097_13625) - 2886532..2886798 (-) 267 WP_043256412.1 accessory factor UbiK family protein -
  ACA097_RS13635 (ACA097_13630) glnK 2887223..2887561 (+) 339 WP_003457590.1 P-II family nitrogen regulator -
  ACA097_RS13640 (ACA097_13635) - 2887603..2888937 (+) 1335 WP_371370398.1 ammonium transporter -
  ACA097_RS13645 (ACA097_13640) - 2889042..2889467 (+) 426 WP_371370399.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  ACA097_RS13650 (ACA097_13645) sutA 2889545..2889871 (+) 327 WP_043256408.1 transcriptional regulator SutA -
  ACA097_RS13655 (ACA097_13650) - 2889941..2890633 (-) 693 WP_371370400.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 52445.23 Da        Isoelectric Point: 7.9978

>NTDB_id=1036477 ACA097_RS13625 WP_043256413.1 2885010..2886497(-) (comM) [Pseudomonas sp. QL9]
MSLAIVHSRAQVGVEAPGVTVEAHLANGLPSLTLVGLPETAVKESKDRVRSAILNSGFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAANGQLPAASLEPLECLGELALSGTVRPVQGVLPAALAARAAGRALVVPKENAEEASLASGLVVYAVGHL
LELAAHLSGQTPLAPYQANGLLRESPPYPDLAEVQGQSAAKRALLVAAAGAHNLLLSGPPGTGKTLLASRLPGLLPPLNE
DEALRVAAIHSVSGRGPLTHWPQRPFRQPHHTASAAALVGGGGRPQPGEITLAHEGVLFLDELPEFDRKVLEVLREPLEN
GEIVIARANGRVRFPARFQLVAAMNPCPCGYLGDPSGRCRCTPEQIQRYRAKLSGPLLDRIDLHLTVSRETTRLAPQASA
ESSADIAARVAVARERQLHRQGCPNAFLDLKSMHQNCALSDQDQAWLETAGERMNLSLRALHRILKVARTLADLEGVAAI
TRPHLAEALQYRAGH

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=1036477 ACA097_RS13625 WP_043256413.1 2885010..2886497(-) (comM) [Pseudomonas sp. QL9]
ATGTCCCTGGCCATCGTCCACAGCCGCGCGCAAGTCGGCGTCGAAGCCCCGGGAGTTACAGTGGAGGCGCACCTGGCCAA
CGGCCTGCCTTCGCTGACCCTGGTGGGCCTGCCGGAAACGGCGGTGAAGGAAAGCAAGGACCGCGTGCGCAGCGCCATCC
TCAACTCGGGCTTCGATTTCCCCGCCCGCCGCATCACCCTGAACCTCGCTCCAGCCGACCTCCCAAAGGACGGCGGCCGC
TTCGACCTGGCCATCGCCCTGGGCATTCTCGCGGCCAACGGCCAGTTGCCGGCAGCTTCGCTCGAACCCCTGGAATGCCT
CGGTGAACTTGCGCTTTCAGGGACCGTGCGCCCCGTTCAGGGCGTGCTTCCGGCAGCCCTGGCAGCGCGTGCGGCAGGGC
GCGCTCTGGTAGTACCGAAGGAAAATGCCGAAGAAGCCAGCCTGGCCAGCGGCCTGGTCGTCTACGCCGTAGGCCACCTG
CTGGAACTCGCGGCGCACCTGAGCGGGCAAACGCCCCTGGCGCCCTACCAGGCCAATGGCCTGCTGCGTGAATCACCGCC
CTACCCCGACCTCGCCGAAGTCCAGGGCCAGAGCGCCGCCAAGCGCGCGCTACTGGTAGCAGCGGCTGGAGCCCACAATC
TGCTTTTGAGCGGCCCGCCCGGCACCGGCAAGACCCTGCTGGCCAGCCGCTTGCCCGGTTTGCTGCCGCCGTTGAACGAA
GACGAAGCCCTGCGCGTGGCGGCCATCCATTCGGTATCCGGGCGCGGTCCGCTGACCCACTGGCCGCAACGCCCGTTCCG
CCAGCCGCATCACACCGCATCCGCGGCCGCGCTGGTGGGTGGCGGGGGACGTCCGCAGCCTGGCGAAATCACGTTGGCGC
ATGAGGGCGTGCTTTTCCTCGATGAGCTTCCGGAGTTCGACCGCAAGGTCCTGGAAGTCCTGCGCGAGCCGTTGGAGAAC
GGCGAGATCGTCATCGCCCGAGCCAACGGGCGCGTGCGCTTTCCCGCGCGCTTCCAGTTGGTGGCGGCGATGAATCCCTG
CCCCTGCGGCTACCTGGGCGATCCCAGCGGGCGCTGCCGCTGCACGCCGGAGCAGATCCAGCGCTACCGCGCCAAGCTTT
CCGGCCCGCTGCTCGACCGCATCGACCTGCATCTCACCGTCAGCCGAGAAACCACGCGCCTGGCGCCCCAGGCGAGTGCC
GAAAGCAGCGCCGACATCGCCGCGCGTGTTGCCGTGGCGCGCGAACGCCAGCTGCATCGCCAAGGTTGTCCGAACGCTTT
CCTCGACCTGAAATCCATGCACCAAAATTGTGCACTGAGCGATCAAGACCAAGCATGGCTGGAAACTGCTGGCGAGCGGA
TGAACCTCTCCCTGCGCGCCCTCCACCGCATCCTCAAGGTCGCCCGGACCCTGGCGGACCTCGAAGGCGTCGCCGCCATC
ACCCGTCCGCACCTGGCCGAAGCCCTGCAGTACCGCGCTGGCCACTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A024HQT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.855

100

0.57
  comM Haemophilus influenzae Rd KW20

55.118

100

0.566
  comM Vibrio campbellii strain DS40M4

55.645

100

0.558
  comM Glaesserella parasuis strain SC1401

53.861

100

0.549
  comM Legionella pneumophila str. Paris

49.703

100

0.507
  comM Legionella pneumophila strain ERS1305867

49.703

100

0.507
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.117

100

0.479

Multiple sequence alignment