Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACA346_RS06050 Genome accession   NZ_CP166970
Coordinates   1186963..1187805 (-) Length   280 a.a.
NCBI ID   WP_289648733.1    Uniprot ID   -
Organism   Streptococcus parasuis strain NX1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1181963..1192805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACA346_RS06030 (ACA346_06030) - 1183193..1183333 (-) 141 Protein_1151 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  ACA346_RS06035 (ACA346_06035) rplL 1183465..1183827 (-) 363 WP_171989410.1 50S ribosomal protein L7/L12 -
  ACA346_RS06040 (ACA346_06040) rplJ 1183895..1184392 (-) 498 WP_217373850.1 50S ribosomal protein L10 -
  ACA346_RS06045 (ACA346_06045) topA 1184777..1186870 (-) 2094 WP_418126345.1 type I DNA topoisomerase -
  ACA346_RS06050 (ACA346_06050) dprA 1186963..1187805 (-) 843 WP_289648733.1 DNA-processing protein DprA Machinery gene
  ACA346_RS06055 (ACA346_06055) - 1187864..1188421 (-) 558 WP_274503930.1 sugar O-acetyltransferase -
  ACA346_RS06060 (ACA346_06060) - 1188433..1188693 (-) 261 WP_024392295.1 metal-sensitive transcriptional regulator -
  ACA346_RS06065 (ACA346_06065) - 1188816..1189151 (+) 336 WP_174846027.1 rhodanese-like domain-containing protein -
  ACA346_RS06070 (ACA346_06070) - 1189148..1190803 (+) 1656 WP_418126350.1 FAD-dependent oxidoreductase -
  ACA346_RS06075 (ACA346_06075) - 1190911..1191462 (+) 552 WP_418126352.1 DUF1836 domain-containing protein -
  ACA346_RS06080 (ACA346_06080) trhA 1191452..1192102 (+) 651 WP_130555297.1 PAQR family membrane homeostasis protein TrhA -

Sequence

Protein


Download         Length: 280 a.a.        Molecular weight: 31344.23 Da        Isoelectric Point: 8.2169

>NTDB_id=1036434 ACA346_RS06050 WP_289648733.1 1186963..1187805(-) (dprA) [Streptococcus parasuis strain NX1]
MNNFELFKWKKAGLSNLNINKVLAYQEKQGKKLTLRNVAVVSECKNPILFMENYKNLDIKACREEFNKYPSFSILDDIYP
TALKQIYNPPVLLFYQGDLELLEKSKLAVVGTRNASENGIQSVQKIIKELNNRFVIVSGMARGIDTVAHIASLKNGGQTI
AVIGTGLDKVYPKENKELQHYIGKHQLVLTEYEPNAQPLKYHFPERNRIIAGLAEGLVVCEAKIRSGSLITCERALEEGR
EIYAIPGSIVDGKSDGCHHLIQEGAKCITSGLDILSDYLF

Nucleotide


Download         Length: 843 bp        

>NTDB_id=1036434 ACA346_RS06050 WP_289648733.1 1186963..1187805(-) (dprA) [Streptococcus parasuis strain NX1]
ATGAATAATTTTGAATTGTTTAAATGGAAAAAAGCAGGCTTGTCCAATCTTAATATTAATAAAGTTTTGGCCTATCAAGA
AAAACAAGGTAAAAAATTAACTTTACGGAATGTCGCTGTAGTATCTGAATGTAAAAATCCAATTCTTTTCATGGAAAATT
ATAAGAATTTAGATATTAAGGCTTGCCGGGAGGAATTTAATAAGTATCCATCTTTTTCAATTTTGGATGATATTTATCCC
ACAGCTTTAAAACAAATTTATAATCCACCAGTTCTCTTATTTTATCAAGGTGATCTTGAATTACTTGAAAAATCAAAATT
GGCAGTGGTAGGTACACGCAATGCCAGTGAAAATGGCATTCAATCTGTTCAGAAAATTATCAAAGAACTCAATAATCGCT
TTGTCATTGTGAGCGGTATGGCCAGGGGGATTGATACAGTAGCTCATATTGCGAGTTTGAAAAATGGCGGACAAACCATT
GCAGTGATTGGAACAGGATTAGATAAGGTATATCCTAAGGAAAACAAGGAGTTACAACACTATATCGGAAAACATCAATT
AGTGCTAACAGAGTATGAACCAAATGCCCAGCCTTTAAAATACCATTTCCCCGAACGAAACCGCATTATTGCCGGATTGG
CTGAAGGTCTGGTGGTCTGTGAGGCAAAAATACGGTCTGGTAGCTTGATTACTTGCGAACGTGCCTTGGAAGAAGGAAGA
GAAATTTATGCCATTCCTGGTTCTATTGTGGATGGAAAATCAGATGGCTGTCATCATTTGATACAGGAAGGGGCAAAGTG
CATTACATCAGGCTTGGACATCCTTTCAGACTATCTATTTTAA

Domains

Predicted by InterproScan.

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(1-60)

DNA recombination-mediator protein A (DNA_processg_A)

(73-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Streptococcus mutans UA159

68.214

100

0.682
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

61.071

100

0.611
  dprA/cilB/dalA Streptococcus pneumoniae D39

61.071

100

0.611
  dprA/cilB/dalA Streptococcus pneumoniae R6

61.071

100

0.611
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

61.071

100

0.611
  dprA/cilB/dalA Streptococcus mitis SK321

61.071

100

0.611
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

60.357

100

0.604
  dprA Lactococcus lactis subsp. cremoris KW2

59.286

100

0.593
  dprA Bacillus subtilis subsp. subtilis str. 168

42.96

98.929

0.425
  dprA Vibrio campbellii strain DS40M4

35.395

100

0.368

Multiple sequence alignment