Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACAX20_RS05685 Genome accession   NZ_CP166919
Coordinates   1288339..1288632 (+) Length   97 a.a.
NCBI ID   WP_371189184.1    Uniprot ID   -
Organism   Thalassotalea maritima strain Sam97     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1283339..1293632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAX20_RS05660 ihfB 1284851..1285135 (+) 285 WP_371189178.1 integration host factor subunit beta -
  ACAX20_RS05665 - 1285366..1285602 (+) 237 WP_371189179.1 lipopolysaccharide assembly protein LapA domain-containing protein -
  ACAX20_RS05670 lapB 1285624..1286793 (+) 1170 WP_371189181.1 lipopolysaccharide assembly protein LapB -
  ACAX20_RS05675 pyrF 1286798..1287496 (+) 699 WP_371189182.1 orotidine-5'-phosphate decarboxylase -
  ACAX20_RS05680 yeiP 1287536..1288108 (+) 573 WP_371189183.1 elongation factor P-like protein YeiP -
  ACAX20_RS05685 comEA 1288339..1288632 (+) 294 WP_371189184.1 ComEA family DNA-binding protein Machinery gene
  ACAX20_RS05690 rne 1288784..1291939 (-) 3156 WP_371189185.1 ribonuclease E -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10484.31 Da        Isoelectric Point: 10.1729

>NTDB_id=1036206 ACAX20_RS05685 WP_371189184.1 1288339..1288632(+) (comEA) [Thalassotalea maritima strain Sam97]
MKNFITPLFILALVAPMLAIAESNTPAAVVAKAEGRIDINSANAQQLTELKGIGLKKAQAIIEYRNSHGPFKALSDLTNV
KGIGDKFVEKNAQYMKL

Nucleotide


Download         Length: 294 bp        

>NTDB_id=1036206 ACAX20_RS05685 WP_371189184.1 1288339..1288632(+) (comEA) [Thalassotalea maritima strain Sam97]
ATGAAAAACTTTATAACACCACTTTTTATACTGGCTTTAGTCGCGCCTATGCTGGCTATAGCAGAAAGTAACACGCCAGC
TGCTGTTGTAGCAAAAGCAGAAGGGCGTATCGATATTAACTCAGCTAACGCTCAACAGTTAACAGAACTCAAAGGTATTG
GTCTTAAAAAAGCTCAGGCGATTATTGAGTACCGTAATAGCCATGGTCCGTTCAAAGCTCTGAGTGATCTGACAAATGTC
AAAGGCATCGGTGATAAGTTTGTTGAAAAGAACGCTCAATATATGAAGCTGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(34-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

51.456

100

0.546
  comEA Vibrio cholerae strain A1552

51.456

100

0.546
  comEA Vibrio campbellii strain DS40M4

51.087

94.845

0.485
  comEA Vibrio parahaemolyticus RIMD 2210633

45.918

100

0.464
  comEA Legionella pneumophila str. Paris

42

100

0.433
  comEA Legionella pneumophila strain ERS1305867

42

100

0.433

Multiple sequence alignment