Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACAX20_RS00270 Genome accession   NZ_CP166919
Coordinates   62171..63694 (-) Length   507 a.a.
NCBI ID   WP_371187537.1    Uniprot ID   -
Organism   Thalassotalea maritima strain Sam97     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 57171..68694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAX20_RS00255 - 58338..59414 (-) 1077 WP_371187531.1 asparaginase -
  ACAX20_RS00260 ilvC 59632..61113 (-) 1482 WP_371187533.1 ketol-acid reductoisomerase -
  ACAX20_RS00265 ilvY 61253..62158 (+) 906 WP_371187535.1 HTH-type transcriptional activator IlvY -
  ACAX20_RS00270 comM 62171..63694 (-) 1524 WP_371187537.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACAX20_RS00275 - 64338..65264 (+) 927 WP_371187539.1 branched-chain amino acid transaminase -
  ACAX20_RS00280 ilvD 65386..67242 (+) 1857 WP_371187541.1 dihydroxy-acid dehydratase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55595.97 Da        Isoelectric Point: 7.3455

>NTDB_id=1036193 ACAX20_RS00270 WP_371187537.1 62171..63694(-) (comM) [Thalassotalea maritima strain Sam97]
MSLACIYTRARIGLDAPSVCTEIHLSNGLPAFQMVGMAETSVREAKNRVRSAIINCGFEFPQKKIIVNLAPADLPKEGGH
FDLPIAVGILVASGQLPKHSIERLEFAGELALNGQLRRIVGDIPMAIAARNAGRKLILPSENADIACRVAGAEIIALQCL
DQLFSHLSGQQVLPLSEYQHMPAPKAAFANDMCDVIGQPLAKRALELAAAGAHNLLFIGPPGTGKTMLASRLPSILPPMT
NEEALETAAIHSVCQHDIDLQYWQQRPFRSPHHTASSAALVGGGSTPIPGEISLAHNGILFLDELPEYDRKVLDVLREPM
ESGEVTISRALQKATYPAKFQLVAAMNPSPTGFYSDKRSTPEQTLRYLSKLSGPFLDRIDIQLEVARLPRGAWAQSSAQE
ESSESVLQRVIQCRQRQQQRQGKTNAHLTSPELKQYCQLTTDDAEFLDLALEKLGLSTRAHHKILKIARTIADLKQQTDI
DRHHLVEALSYRAMDRLIRLLTESVTP

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=1036193 ACAX20_RS00270 WP_371187537.1 62171..63694(-) (comM) [Thalassotalea maritima strain Sam97]
ATGAGCTTAGCTTGCATCTATACTCGTGCTCGTATTGGACTGGACGCACCGAGCGTCTGTACTGAAATTCACCTCAGTAA
TGGCCTGCCAGCGTTTCAAATGGTAGGCATGGCGGAAACCTCGGTGAGAGAAGCTAAAAATAGGGTCCGCAGTGCCATCA
TCAACTGTGGCTTTGAGTTTCCACAAAAAAAAATTATTGTTAACCTCGCACCCGCTGATTTACCCAAAGAGGGTGGTCAC
TTTGACTTACCTATTGCGGTGGGAATTTTGGTTGCCTCAGGGCAACTGCCAAAGCATTCCATTGAGCGGCTTGAATTTGC
CGGAGAATTGGCTCTCAACGGCCAATTACGGCGAATTGTTGGCGATATCCCCATGGCAATTGCTGCGCGTAATGCCGGCC
GTAAACTCATTCTACCAAGCGAAAACGCCGACATTGCTTGTCGCGTAGCCGGTGCTGAAATAATCGCCTTGCAATGTCTT
GATCAACTATTTAGCCACCTATCCGGACAACAAGTATTACCGCTATCAGAGTACCAGCACATGCCAGCTCCCAAGGCAGC
ATTTGCTAATGATATGTGCGATGTAATAGGCCAACCCCTTGCCAAAAGAGCATTAGAACTTGCCGCTGCTGGCGCCCATA
ACTTACTGTTTATTGGCCCTCCGGGTACAGGCAAGACTATGCTAGCATCACGATTACCGTCAATTCTGCCACCAATGACC
AATGAAGAGGCCTTAGAGACTGCGGCCATTCATTCTGTATGCCAGCACGATATCGATTTACAGTATTGGCAACAACGGCC
ATTCAGATCTCCACATCATACCGCCTCATCGGCGGCATTAGTTGGTGGTGGTTCTACACCAATACCAGGGGAGATATCGC
TGGCTCATAATGGTATTTTGTTTTTAGATGAGCTGCCTGAATACGATCGTAAAGTGCTCGATGTATTACGCGAACCGATG
GAATCAGGAGAGGTCACCATATCCAGAGCGCTGCAAAAAGCTACCTACCCAGCTAAGTTTCAACTGGTCGCAGCAATGAA
CCCAAGCCCGACAGGTTTCTACAGTGATAAACGCTCAACACCAGAGCAAACATTGCGTTACCTTAGTAAGTTGTCAGGCC
CATTTCTCGATCGTATTGACATTCAGCTTGAAGTAGCACGATTACCCAGAGGCGCATGGGCGCAGAGTTCAGCACAAGAG
GAGTCTAGCGAATCCGTACTACAGCGGGTTATTCAATGCCGGCAGCGACAGCAGCAGCGGCAAGGCAAAACCAACGCCCA
CTTAACCAGCCCAGAGTTAAAACAATACTGCCAACTGACTACTGACGATGCGGAGTTTCTCGATTTAGCTCTTGAAAAGC
TTGGTTTATCGACGCGTGCGCACCATAAAATACTAAAAATAGCCCGAACCATTGCCGACCTAAAGCAACAAACCGATATT
GATCGCCATCACTTGGTTGAAGCATTAAGCTATCGTGCCATGGACCGATTAATTCGCCTGCTAACGGAGAGTGTTACCCC
CTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(22-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.634

99.606

0.564
  comM Vibrio campbellii strain DS40M4

55.731

99.803

0.556
  comM Glaesserella parasuis strain SC1401

54.51

100

0.548
  comM Haemophilus influenzae Rd KW20

54.832

100

0.548
  comM Legionella pneumophila str. Paris

46.123

99.211

0.458
  comM Legionella pneumophila strain ERS1305867

46.123

99.211

0.458
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.652

99.803

0.456

Multiple sequence alignment