Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   OC536_RS05630 Genome accession   NZ_OW443150
Coordinates   1205043..1206047 (+) Length   334 a.a.
NCBI ID   WP_000568491.1    Uniprot ID   Q9KR02
Organism   Vibrio cholerae strain CNRVC190247 isolate YE-NCPHL-18035-PI     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1200043..1211047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OC536_RS05605 (CNRVC190247_01131) lpxH 1200839..1201609 (-) 771 WP_000556998.1 UDP-2,3-diacylglucosamine diphosphatase -
  OC536_RS05610 (CNRVC190247_01132) - 1201650..1202144 (-) 495 WP_000631302.1 peptidylprolyl isomerase -
  OC536_RS05615 (CNRVC190247_01133) cysS 1202290..1203669 (+) 1380 WP_000913182.1 cysteine--tRNA ligase -
  OC536_RS05620 (CNRVC190247_01134) ruvC 1203757..1204278 (+) 522 WP_000111359.1 crossover junction endodeoxyribonuclease RuvC -
  OC536_RS05625 (CNRVC190247_01135) ruvA 1204372..1204986 (+) 615 WP_000580350.1 Holliday junction branch migration protein RuvA Machinery gene
  OC536_RS05630 (CNRVC190247_01136) ruvB 1205043..1206047 (+) 1005 WP_000568491.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  OC536_RS05635 (CNRVC190247_01138) cydA 1206502..1208088 (+) 1587 WP_000568053.1 cytochrome ubiquinol oxidase subunit I -
  OC536_RS05640 (CNRVC190247_01139) cydB 1208106..1209242 (+) 1137 WP_000460767.1 cytochrome d ubiquinol oxidase subunit II -
  OC536_RS05645 (CNRVC190247_01140) cydX 1209255..1209362 (+) 108 WP_000270285.1 cytochrome bd-I oxidase subunit CydX -
  OC536_RS05650 ybgE 1209355..1209672 (+) 318 WP_001286620.1 cyd operon protein YbgE -
  OC536_RS05655 (CNRVC190247_01141) ybgC 1209841..1210248 (+) 408 WP_001091290.1 tol-pal system-associated acyl-CoA thioesterase -
  OC536_RS05660 (CNRVC190247_01142) tolQ 1210238..1210921 (+) 684 WP_000123083.1 protein TolQ -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37298.75 Da        Isoelectric Point: 5.0460

>NTDB_id=1036036 OC536_RS05630 WP_000568491.1 1205043..1206047(+) (ruvB) [Vibrio cholerae strain CNRVC190247 isolate YE-NCPHL-18035-PI]
MIEADRLIAPISNHFKDEEVIDRAIRPKKLADYQGQDHVRDQMEIFIQAAQMRQEALDHLLIFGPPGLGKTTLANIVANE
MGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLI
GATTRAGSLTSPLRDRFGIVQRLEYYKVADLQHIVQRSAQCLGLSMDSEGALEVARRARGTPRIANRLLRRVRDYAEVKG
DGHICAQTADRALNMLDVDHQGFDYMDRKLLLAIMEKFSGGPVGIDNLAAAIGEEKDTIEDVLEPFLIQQGYLQRTPRGR
IATDRAYLHFGIEK

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=1036036 OC536_RS05630 WP_000568491.1 1205043..1206047(+) (ruvB) [Vibrio cholerae strain CNRVC190247 isolate YE-NCPHL-18035-PI]
ATGATAGAAGCCGATCGTTTAATTGCTCCAATCAGCAACCACTTCAAAGATGAGGAAGTGATTGATCGAGCGATTCGTCC
CAAAAAGCTTGCCGATTACCAAGGTCAAGATCATGTTCGTGATCAGATGGAAATCTTCATTCAAGCGGCACAAATGCGCC
AAGAAGCCTTAGATCATCTGCTGATTTTCGGGCCTCCGGGCTTGGGTAAAACCACCTTGGCCAACATAGTCGCTAACGAA
ATGGGCGTGAATATTCGTACTACTTCAGGTCCTGTATTGGAAAAAGCGGGAGATTTAGCGGCACTGCTAACCAATCTTGA
AGAAAACGATGTGCTGTTTATTGATGAAATCCATCGTTTGAGCCCAATGGTTGAGGAAGTACTGTATCCCGCTATGGAAG
ATTACCAACTCGATATCATGATTGGTGAAGGCCCAGCAGCACGCTCAATCAAAATCGATCTCCCTCCTTTTACTTTAATT
GGAGCCACCACACGTGCAGGCTCGCTGACTTCACCATTGCGTGACCGATTTGGGATAGTGCAACGATTGGAGTATTACAA
AGTCGCCGATTTACAACACATAGTGCAACGTAGTGCGCAGTGTCTCGGTCTTTCGATGGATAGTGAGGGCGCTCTTGAAG
TGGCTCGCCGTGCACGTGGAACCCCGCGGATTGCCAATCGCCTGCTGCGCCGGGTGCGAGATTATGCCGAAGTGAAAGGG
GATGGGCACATTTGTGCGCAAACCGCTGATAGGGCACTTAATATGCTTGATGTTGACCATCAAGGCTTTGATTACATGGA
TAGAAAGCTGCTGTTAGCAATAATGGAAAAGTTTTCAGGTGGCCCAGTCGGAATCGATAACCTTGCGGCAGCCATTGGCG
AAGAGAAAGATACGATAGAAGATGTTCTTGAGCCATTTCTCATTCAGCAGGGTTATTTACAACGTACACCACGCGGTCGT
ATCGCGACAGATCGCGCTTATTTGCATTTCGGTATTGAAAAATAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(25-183)

RuvB C-terminal winged helix domain (WHD_RuvB)

(261-330)

RuvB AAA lid domain (AAA_lid_4)

(186-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KR02

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

61.682

96.108

0.593
  ruvB Streptococcus pneumoniae TIGR4

59.937

94.91

0.569
  ruvB Streptococcus pneumoniae R6

59.937

94.91

0.569
  ruvB Streptococcus pneumoniae D39

59.937

94.91

0.569
  ruvB Synechocystis sp. PCC 6803

55.663

92.515

0.515
  ruvB Helicobacter pylori 26695

54.276

91.018

0.494