Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   OC536_RS05625 Genome accession   NZ_OW443150
Coordinates   1204372..1204986 (+) Length   204 a.a.
NCBI ID   WP_000580350.1    Uniprot ID   A0ABX9FGD2
Organism   Vibrio cholerae strain CNRVC190247 isolate YE-NCPHL-18035-PI     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1199372..1209986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OC536_RS05600 (CNRVC190247_01130) - 1199559..1200773 (-) 1215 WP_001908039.1 EAL and HDOD domain-containing protein -
  OC536_RS05605 (CNRVC190247_01131) lpxH 1200839..1201609 (-) 771 WP_000556998.1 UDP-2,3-diacylglucosamine diphosphatase -
  OC536_RS05610 (CNRVC190247_01132) - 1201650..1202144 (-) 495 WP_000631302.1 peptidylprolyl isomerase -
  OC536_RS05615 (CNRVC190247_01133) cysS 1202290..1203669 (+) 1380 WP_000913182.1 cysteine--tRNA ligase -
  OC536_RS05620 (CNRVC190247_01134) ruvC 1203757..1204278 (+) 522 WP_000111359.1 crossover junction endodeoxyribonuclease RuvC -
  OC536_RS05625 (CNRVC190247_01135) ruvA 1204372..1204986 (+) 615 WP_000580350.1 Holliday junction branch migration protein RuvA Machinery gene
  OC536_RS05630 (CNRVC190247_01136) ruvB 1205043..1206047 (+) 1005 WP_000568491.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  OC536_RS05635 (CNRVC190247_01138) cydA 1206502..1208088 (+) 1587 WP_000568053.1 cytochrome ubiquinol oxidase subunit I -
  OC536_RS05640 (CNRVC190247_01139) cydB 1208106..1209242 (+) 1137 WP_000460767.1 cytochrome d ubiquinol oxidase subunit II -
  OC536_RS05645 (CNRVC190247_01140) cydX 1209255..1209362 (+) 108 WP_000270285.1 cytochrome bd-I oxidase subunit CydX -
  OC536_RS05650 ybgE 1209355..1209672 (+) 318 WP_001286620.1 cyd operon protein YbgE -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22049.75 Da        Isoelectric Point: 5.0954

>NTDB_id=1036035 OC536_RS05625 WP_000580350.1 1204372..1204986(+) (ruvA) [Vibrio cholerae strain CNRVC190247 isolate YE-NCPHL-18035-PI]
MIGRLRGTLIEKLPPQILIEIGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLLYGFNTVNERALFREVIKANG
VGPKMGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKTAERLVVEMKDRLKGWGAGDLFTPATDAAPVDSTPVIAQNA
QEEAMSALLALGYKPPQASKAVSQVAKAGMSSEELIREALKSMV

Nucleotide


Download         Length: 615 bp        

>NTDB_id=1036035 OC536_RS05625 WP_000580350.1 1204372..1204986(+) (ruvA) [Vibrio cholerae strain CNRVC190247 isolate YE-NCPHL-18035-PI]
GTGATTGGACGTCTTCGCGGTACGCTGATTGAAAAACTCCCGCCACAAATTTTGATTGAAATCGGCGGGATTGGCTATGA
AGTACAAATGCCGATGAGTTGTATTTACGAACTTCCCAATATTGGTGAAGAAGCCATCATCTATACTCATTTTGTTGTGC
GGGAAGATGCGCAGCTATTGTACGGATTTAACACGGTCAATGAGCGAGCACTCTTTCGCGAGGTGATCAAAGCTAATGGG
GTGGGGCCAAAAATGGGGCTCGCAATACTTTCTGGCATGACAGCCAATCAGTTTGTGACTTGTGTGGAAAAAGAAGATAT
CTCTACCCTGATTAAATTACCGGGAGTCGGGAAGAAGACGGCTGAGCGATTGGTGGTGGAAATGAAAGATCGCCTGAAAG
GATGGGGAGCGGGTGATCTCTTTACTCCTGCAACCGATGCGGCCCCTGTCGATTCTACGCCCGTGATTGCTCAAAATGCT
CAGGAAGAAGCCATGAGCGCGCTATTGGCGCTAGGTTACAAGCCCCCTCAAGCTTCCAAAGCGGTATCGCAAGTGGCTAA
AGCAGGAATGAGCAGTGAAGAGTTGATCCGTGAAGCGCTCAAATCTATGGTGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(159-203)

Helix-hairpin-helix domain (HHH_5)

(72-130)

RuvA N terminal domain (RuvA_N)

(1-62)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

36.098

100

0.363

Multiple sequence alignment