Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   OC536_RS05250 Genome accession   NZ_OW443150
Coordinates   1113417..1113728 (+) Length   103 a.a.
NCBI ID   WP_001166105.1    Uniprot ID   Q9KQT1
Organism   Vibrio cholerae strain CNRVC190247 isolate YE-NCPHL-18035-PI     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1108417..1118728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OC536_RS05235 (CNRVC190247_01055) lon 1108454..1110814 (+) 2361 WP_001047611.1 endopeptidase La -
  OC536_RS05240 (CNRVC190247_01056) - 1110998..1111270 (+) 273 WP_001044516.1 HU family DNA-binding protein -
  OC536_RS05245 (CNRVC190247_01057) ppiD 1111423..1113282 (+) 1860 WP_032476350.1 peptidylprolyl isomerase -
  OC536_RS05250 (CNRVC190247_01058) comEA 1113417..1113728 (+) 312 WP_001166105.1 ComEA family DNA-binding protein Machinery gene
  OC536_RS05255 (CNRVC190247_01059) cmk 1113911..1114588 (+) 678 WP_000094751.1 (d)CMP kinase -
  OC536_RS05260 (CNRVC190247_01060) rpsA 1114697..1116367 (+) 1671 WP_000140318.1 30S ribosomal protein S1 -
  OC536_RS05265 (CNRVC190247_01061) ihfB 1116656..1116934 (+) 279 WP_000167341.1 integration host factor subunit beta -
  OC536_RS05270 (CNRVC190247_01062) - 1117073..1117354 (+) 282 WP_000691492.1 LapA family protein -
  OC536_RS05275 (CNRVC190247_01063) lapB 1117366..1118535 (+) 1170 WP_000889971.1 lipopolysaccharide assembly protein LapB -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 10966.78 Da        Isoelectric Point: 5.0506

>NTDB_id=1036030 OC536_RS05250 WP_001166105.1 1113417..1113728(+) (comEA) [Vibrio cholerae strain CNRVC190247 isolate YE-NCPHL-18035-PI]
MQIKTKIVTLFLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFTHI
DDLTNVKGIGEATVRNNAARILL

Nucleotide


Download         Length: 312 bp        

>NTDB_id=1036030 OC536_RS05250 WP_001166105.1 1113417..1113728(+) (comEA) [Vibrio cholerae strain CNRVC190247 isolate YE-NCPHL-18035-PI]
ATGCAAATCAAAACCAAAATAGTGACACTGTTTCTTTCTCTCTGCCTGCCGACATTACCGTTACTGGCCAATGCCGAGGA
AACGGCACCCGCTGCGCAGGTAGAAGAAGGTATTGTGATCACTGTCAACATTAATACCGCTTCTGCAGAAGAACTGGCGA
CGTTACTCAAAGGCATCGGGCTTAAGAAAGCTCAGGCCATTGTCGATTATCGAGAAGCCAACGGTCCTTTTACTCATATC
GATGATCTGACGAATGTGAAAGGGATTGGTGAAGCGACAGTGCGCAACAATGCCGCAAGGATCTTGTTATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(41-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KQT1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

100

100

1
  comEA Vibrio cholerae strain A1552

100

100

1
  comEA Vibrio parahaemolyticus RIMD 2210633

62.766

91.262

0.573
  comEA Vibrio campbellii strain DS40M4

58.333

93.204

0.544
  comE1/comEA Haemophilus influenzae Rd KW20

40.541

100

0.437