Detailed information NTG1035876

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACAW63_RS09650
• Genome accession: NZ_CP166873
• Coordinates: 2094135..2095007 (-)
• Length: 290 a.a.
• NCBI ID: WP_371233294.1
• Uniprot ID: -
• Organism: Pseudomonas sp. QE6
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2089135..2100007

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACAW63_RS09610 (ACAW63_09605)	-	2090182..2090352 (-)	171	WP_371233285.1	DUF3094 family protein	-
ACAW63_RS09615 (ACAW63_09610)	-	2090435..2091064 (-)	630	WP_343574954.1	DUF1780 domain-containing protein	-
ACAW63_RS09620 (ACAW63_09615)	-	2091173..2091589 (+)	417	WP_371233287.1	GNAT family N-acetyltransferase	-
ACAW63_RS09625 (ACAW63_09620)	-	2091592..2092059 (+)	468	WP_371233288.1	FAD/FMN-containing dehydrogenase	-
ACAW63_RS09630 (ACAW63_09625)	-	2092056..2092745 (+)	690	WP_371233291.1	energy-coupling factor ABC transporter permease	-
ACAW63_RS09635 (ACAW63_09630)	-	2092852..2093067 (+)	216	WP_371233292.1	hypothetical protein	-
ACAW63_RS09640 (ACAW63_09635)	yacG	2093261..2093464 (-)	204	WP_015475735.1	DNA gyrase inhibitor YacG	-
ACAW63_RS09645 (ACAW63_09640)	coaE	2093461..2094069 (-)	609	WP_371233293.1	dephospho-CoA kinase	-
ACAW63_RS09650 (ACAW63_09645)	pilD	2094135..2095007 (-)	873	WP_371233294.1	A24 family peptidase	Machinery gene
ACAW63_RS09655 (ACAW63_09650)	pilC	2095013..2096230 (-)	1218	WP_371233295.1	type II secretion system F family protein	Machinery gene
ACAW63_RS09660 (ACAW63_09655)	pilB	2096234..2097937 (-)	1704	WP_371233296.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACAW63_RS09665 (ACAW63_09660)	pilA	2098164..2098604 (+)	441	WP_371233297.1	pilin	Machinery gene

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31916.90 Da
• Isoelectric Point: 7.3227

>NTDB_id=1035876 ACAW63_RS09650 WP_371233294.1 2094135..2095007(-) (pilD) [Pseudomonas sp. QE6]
MPVLNFLASTPLAFVLCALVLGLLIGSFLNVVIHRLPRMMQRDWQREAREALELPADEPQPTYNLILPNSQCPHCGHEIK
AWENIPVVSYLALGGKCSSCKTPISKRYPLIELACGALSAFIAWHYGFGWQAGAMLLLGWGLLAMSMIDVDHQLLPDALV
LPLLWLGLIVNYFGLFTNLGGALWGAVFGYLSLWSVYWLFKLLTGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSLVG
AVLGIITLRLRKAETSTPIPFGPYLAIAGWIALLWGDQITATYLQFAGFH

Nucleotide

• Length: 873 bp

>NTDB_id=1035876 ACAW63_RS09650 WP_371233294.1 2094135..2095007(-) (pilD) [Pseudomonas sp. QE6]
ATGCCAGTCCTCAACTTCCTGGCCAGCACCCCGCTGGCCTTTGTTTTATGCGCGCTCGTCCTCGGGCTTCTGATCGGCAG
CTTCCTCAACGTGGTCATCCATCGCCTGCCGCGAATGATGCAGCGGGACTGGCAGCGCGAGGCGCGCGAAGCGCTGGAGC
TGCCTGCAGACGAGCCGCAACCCACCTACAACCTGATTCTCCCGAACTCCCAGTGCCCGCACTGCGGCCACGAGATCAAG
GCCTGGGAAAACATTCCCGTGGTGAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGACGCCGATCAGCAAGCG
CTACCCGCTGATCGAGCTGGCGTGCGGCGCGCTCTCGGCCTTCATCGCCTGGCACTACGGCTTCGGTTGGCAGGCCGGCG
CCATGCTGCTGCTCGGCTGGGGCCTGCTGGCGATGAGCATGATTGATGTCGATCATCAGTTGCTGCCGGATGCGCTGGTG
CTGCCGCTGCTCTGGCTGGGGCTGATCGTCAATTACTTCGGGCTGTTCACCAATCTGGGCGGCGCACTCTGGGGTGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTACTGGCTGTTCAAGCTGCTCACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCGATGCTCGGCGCCTGGGGCGGTTGGCAGGTGCTGCCGCTGACTATCCTGCTGTCGTCCCTGGTGGGC
GCGGTACTGGGCATCATTACCCTGCGCCTGCGCAAGGCCGAAACCAGTACACCGATCCCCTTCGGCCCCTATCTGGCCAT
TGCCGGCTGGATTGCGCTGCTCTGGGGTGATCAAATAACCGCGACCTATCTGCAGTTCGCCGGTTTCCACTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.348	95.172	0.517
pilD	Vibrio campbellii strain DS40M4	53.261	95.172	0.507
pilD	Acinetobacter baumannii D1279779	51.773	97.241	0.503
pilD	Acinetobacter nosocomialis M2	51.246	96.897	0.497
pilD	Neisseria gonorrhoeae MS11	51.661	93.448	0.483