Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ABVF47_RS07015 Genome accession   NZ_CP166869
Coordinates   1532853..1534031 (-) Length   392 a.a.
NCBI ID   WP_369608793.1    Uniprot ID   -
Organism   Snodgrassella alvi strain Acer06     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1527853..1539031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVF47_RS06995 (ABVF47_006995) - 1528955..1529209 (-) 255 WP_267409014.1 YfhL family 4Fe-4S dicluster ferredoxin -
  ABVF47_RS07000 (ABVF47_007000) rsmD 1529298..1529870 (-) 573 WP_367417848.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ABVF47_RS07005 (ABVF47_007005) topA 1529949..1532243 (-) 2295 WP_371687810.1 type I DNA topoisomerase -
  ABVF47_RS07010 (ABVF47_007010) - 1532383..1532841 (-) 459 WP_370388799.1 DUF494 family protein -
  ABVF47_RS07015 (ABVF47_007015) dprA 1532853..1534031 (-) 1179 WP_369608793.1 DNA-processing protein DprA Machinery gene
  ABVF47_RS07020 (ABVF47_007020) - 1534355..1535140 (+) 786 WP_371687811.1 DUF2071 domain-containing protein -
  ABVF47_RS07025 (ABVF47_007025) ruvC 1535250..1535801 (-) 552 WP_367645225.1 crossover junction endodeoxyribonuclease RuvC -
  ABVF47_RS07030 (ABVF47_007030) murU 1535895..1536626 (-) 732 WP_367645226.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  ABVF47_RS07035 (ABVF47_007035) - 1536732..1537940 (-) 1209 WP_370387142.1 PilT/PilU family type 4a pilus ATPase -

Sequence

Protein


Download         Length: 392 a.a.        Molecular weight: 42466.76 Da        Isoelectric Point: 6.2833

>NTDB_id=1035706 ABVF47_RS07015 WP_369608793.1 1532853..1534031(-) (dprA) [Snodgrassella alvi strain Acer06]
MNELERYAWIELALTPYIGSETFLRILKHFGSAQIALAADVAEIKPFLIRSRAGQYWRSEEARKAAEAALQWEQKHENAR
LLLLAENDYPPLLSEGLTPPPLLFIRGNIHYLQQPSLAIVGSRHATPQAMRIARDFAKALAQKEIAVISGMADGIDTAAH
QGALLGKGTTVAVWGTGIDRVYPARNKSLAAEIAEHGCIISEFPLGTRSLAGNFPRRNRLIAALSQGTLVIEAATESGSL
ITARLAGEMGREVMAIPGSIDNPLSKGCHALIKQGAKLVENLDDILHECPFLLQKTQVHSYSHQSSQFIQSDTPVLLVEE
TEDLLLDKTAASALTSPEKQILDGLGYGIVHPDTLVSTLGIPATDVYANLMALELGGWITALPGGCYQRIKS

Nucleotide


Download         Length: 1179 bp        

>NTDB_id=1035706 ABVF47_RS07015 WP_369608793.1 1532853..1534031(-) (dprA) [Snodgrassella alvi strain Acer06]
ATGAATGAGCTCGAGCGCTATGCTTGGATTGAGCTGGCATTAACCCCCTATATTGGCAGTGAAACATTTTTACGTATCTT
AAAACATTTTGGTTCGGCACAAATCGCTTTGGCCGCAGATGTGGCTGAAATTAAACCTTTCCTGATTCGTTCTCGGGCCG
GTCAATACTGGCGCAGTGAGGAAGCAAGAAAAGCAGCTGAAGCCGCCCTGCAATGGGAGCAAAAGCATGAAAATGCACGC
TTATTATTGCTGGCTGAAAATGATTATCCACCATTGCTTTCTGAAGGTTTGACACCGCCTCCATTATTATTTATACGTGG
TAACATCCATTATCTGCAACAGCCCTCATTGGCTATTGTTGGCAGCCGACATGCTACGCCACAAGCAATGCGTATTGCCC
GTGATTTTGCCAAGGCATTAGCACAAAAAGAAATTGCTGTGATATCGGGCATGGCTGATGGTATAGATACCGCAGCCCAT
CAAGGTGCTTTACTTGGCAAAGGTACTACTGTTGCCGTCTGGGGCACAGGAATTGATCGCGTGTATCCGGCACGCAACAA
ATCATTGGCTGCTGAAATTGCCGAACATGGCTGTATAATTTCAGAATTTCCACTAGGCACTCGTTCTCTGGCCGGTAACT
TTCCCCGTCGCAATCGCCTGATTGCAGCTCTCAGCCAAGGTACCCTAGTGATAGAGGCTGCAACCGAATCTGGCTCCCTG
ATTACTGCGCGATTGGCCGGTGAAATGGGTCGTGAAGTAATGGCTATACCTGGTTCGATTGATAACCCATTAAGCAAAGG
TTGTCATGCATTGATAAAACAGGGTGCCAAACTGGTTGAAAATCTAGATGATATACTTCATGAGTGCCCTTTCCTCTTGC
AAAAAACGCAAGTGCATTCATATAGCCATCAATCTTCACAATTTATTCAATCAGATACACCTGTACTGCTTGTTGAAGAG
ACTGAAGATCTCTTATTAGACAAAACAGCTGCATCAGCACTCACATCGCCGGAGAAACAAATTCTGGATGGATTAGGTTA
TGGTATCGTACATCCAGATACACTGGTCTCAACACTTGGCATCCCTGCTACAGATGTGTATGCTAATCTTATGGCACTGG
AGCTAGGTGGCTGGATTACCGCACTGCCGGGTGGTTGTTATCAACGCATTAAATCTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(76-280)

DprA winged helix domain (DprA_WH)

(329-385)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria meningitidis strain C311

58.049

100

0.607
  dprA Neisseria meningitidis MC58

58.049

100

0.607
  dprA Neisseria gonorrhoeae strain FA1090

58.955

100

0.605
  dprA Neisseria gonorrhoeae MS11

58.458

100

0.599
  dprA Vibrio cholerae strain A1552

37.975

100

0.383
  dprA Vibrio campbellii strain DS40M4

37.371

98.98

0.37

Multiple sequence alignment