Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB1S55_RS16555 Genome accession   NZ_CP166840
Coordinates   3808191..3808769 (-) Length   192 a.a.
NCBI ID   WP_370979289.1    Uniprot ID   -
Organism   Agaribacterium sp. ZY112     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3803191..3813769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1S55_RS16535 (AB1S55_16530) fabA 3803792..3804319 (+) 528 WP_370981612.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA -
  AB1S55_RS16540 (AB1S55_16535) fabB 3804406..3805620 (+) 1215 WP_370979286.1 beta-ketoacyl-ACP synthase I -
  AB1S55_RS16545 (AB1S55_16540) - 3805731..3806582 (-) 852 WP_370979287.1 sugar nucleotide-binding protein -
  AB1S55_RS16550 (AB1S55_16545) - 3806773..3808107 (+) 1335 WP_370979288.1 ABC transporter substrate-binding protein -
  AB1S55_RS16555 (AB1S55_16550) ssb 3808191..3808769 (-) 579 WP_370979289.1 single-stranded DNA-binding protein Machinery gene
  AB1S55_RS16560 (AB1S55_16555) - 3808814..3810154 (-) 1341 WP_370979290.1 MFS transporter -
  AB1S55_RS16565 (AB1S55_16560) - 3810451..3811116 (+) 666 WP_370979291.1 LuxR C-terminal-related transcriptional regulator -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 20793.03 Da        Isoelectric Point: 5.2534

>NTDB_id=1035626 AB1S55_RS16555 WP_370979289.1 3808191..3808769(-) (ssb) [Agaribacterium sp. ZY112]
MASRGVNKVILVGNCGQDPETKFTANGAAVTNLSVATSETWKDKQTGQNQERTEWHRVVFFNRLAEIVGEYVRKGSKLYI
EGSLRTRKWQDQGGQDRYTTEIVASEMQMLDSRGEQGGAYGGAAMGGMAPQQAAPQQPFAQQPQQAAPQQAYAQAPQQAA
SQPRQAPQQAPQAAPAPQAPPAMDAFDDDIPF

Nucleotide


Download         Length: 579 bp        

>NTDB_id=1035626 AB1S55_RS16555 WP_370979289.1 3808191..3808769(-) (ssb) [Agaribacterium sp. ZY112]
ATGGCGTCTCGTGGAGTAAACAAAGTGATCTTGGTTGGTAATTGTGGCCAAGACCCTGAAACCAAGTTTACGGCGAATGG
AGCGGCAGTCACAAACTTAAGTGTTGCAACTTCTGAAACTTGGAAGGATAAGCAGACTGGGCAAAATCAGGAGCGTACTG
AGTGGCATCGAGTGGTGTTTTTCAATCGTCTTGCTGAAATTGTTGGCGAGTACGTTCGTAAGGGTAGTAAGTTGTATATC
GAAGGAAGTTTACGTACTCGTAAGTGGCAGGACCAAGGTGGTCAAGATCGCTATACAACTGAAATTGTTGCTAGTGAAAT
GCAAATGCTTGATAGCCGTGGTGAGCAGGGTGGTGCTTATGGCGGCGCGGCAATGGGGGGAATGGCTCCGCAACAAGCTG
CGCCTCAGCAGCCCTTTGCGCAGCAGCCTCAACAGGCCGCACCACAACAGGCATATGCGCAGGCGCCTCAGCAAGCAGCT
TCTCAGCCAAGGCAAGCGCCTCAACAAGCTCCTCAGGCTGCACCTGCTCCTCAAGCACCTCCTGCTATGGATGCATTTGA
TGATGATATTCCATTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.822

100

0.562
  ssb Glaesserella parasuis strain SC1401

53.191

97.917

0.521
  ssb Neisseria gonorrhoeae MS11

47.059

97.396

0.458
  ssb Neisseria meningitidis MC58

46.524

97.396

0.453

Multiple sequence alignment