Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   STAB904_RS08660 Genome accession   NZ_CP007241
Coordinates   1780645..1781751 (+) Length   368 a.a.
NCBI ID   WP_011185108.1    Uniprot ID   Q5X9A5
Organism   Streptococcus pyogenes strain 1E1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1775645..1786751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STAB904_RS08640 (STAB904_09690) hasA 1776323..1777582 (+) 1260 WP_021775371.1 hyaluronan synthase HasA -
  STAB904_RS08645 (STAB904_09695) hasB 1777618..1778826 (+) 1209 WP_009880737.1 UDP-glucose 6-dehydrogenase HasB -
  STAB904_RS08650 (STAB904_09705) hasC 1779008..1779922 (+) 915 WP_032465326.1 UTP--glucose-1-phosphate uridylyltransferase HasC -
  STAB904_RS08655 (STAB904_09710) yaaA 1780230..1780643 (+) 414 WP_038434347.1 S4 domain-containing protein YaaA -
  STAB904_RS08660 (STAB904_09715) recF 1780645..1781751 (+) 1107 WP_011185108.1 DNA replication/repair protein RecF Machinery gene
  STAB904_RS08665 (STAB904_09720) - 1781806..1782669 (-) 864 WP_002992310.1 GRP family sugar transporter -
  STAB904_RS08670 (STAB904_09725) guaB 1782872..1784353 (-) 1482 WP_002991454.1 IMP dehydrogenase -
  STAB904_RS08675 (STAB904_09730) trpS 1784661..1785683 (-) 1023 WP_011527823.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 41795.71 Da        Isoelectric Point: 7.8294

>NTDB_id=103555 STAB904_RS08660 WP_011185108.1 1780645..1781751(+) (recF) [Streptococcus pyogenes strain 1E1]
MWIKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIHFDHSTVSLTGKIQRISGT
VDLEINLSDKGRVTKINALKQAKLSDYIGTMMVVLFAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQR
NSYLKSAQQIDAAFLAVLDEQLAGYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKKTNIYQQFLH
QLEKNHQKDFFRKNTSVGPHRDDLAFYINGMNANFASQGQHRSLILSLKMAEVSLMKALTGDNPILLLDDVMSELDNTRQ
TKLLETVIKENVQTFITTTSLDHLSQLPEGIRIFHVTKGTVQIDSDIH

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=103555 STAB904_RS08660 WP_011185108.1 1780645..1781751(+) (recF) [Streptococcus pyogenes strain 1E1]
ATGTGGATTAAAGAGTTAGAGTTAAAACATTATCGCAATTATGACCACCTGCTTGCCTCATTTTCGTCGGGTTTAAATGT
CTTTATCGGTAATAATGCTCAAGGAAAAACCAATTTTCTCGAGGCAATCTATTTTCTATCACTTACTAGAAGTCATCGCA
CGAGGGCTGATAAAGAATTGATTCATTTTGATCACTCAACTGTTTCTCTTACTGGTAAGATTCAGCGTATTAGTGGTACT
GTTGATTTAGAAATCAATCTATCAGATAAAGGACGTGTGACAAAGATTAATGCGCTAAAGCAAGCAAAATTATCTGATTA
TATTGGAACGATGATGGTTGTGCTTTTTGCACCAGAAGATTTGCAACTAGTTAAGGGAGCACCTAGCCTTCGTCGCAAAT
TTATCGACATTGACCTTGGTCAAATTAAGCCTGTTTACTTATCTGAGTTATCCCATTATAACCACGTGCTTAAACAGCGT
AATAGCTATTTAAAAAGTGCCCAACAAATTGATGCCGCTTTTCTAGCTGTTCTAGATGAGCAATTAGCTGGCTATGGAGC
CCGTGTCATGGAACATCGTATTGATTTTATCAATGCGTTAGAGAAAGAAGCAAATACTCATCACCAAGCCATCTCAAATG
GTTTAGAAAGTCTCTCTCTCTCCTATCAGTCGTCAGTTGTCTTTGACAAAAAAACTAATATTTACCAACAATTTTTACAC
CAACTTGAAAAAAATCATCAGAAAGATTTCTTCCGTAAAAACACTAGCGTTGGTCCACATCGCGATGACTTAGCCTTTTA
CATTAACGGGATGAATGCTAACTTTGCTAGTCAAGGTCAGCACCGCAGCCTTATTCTTTCCTTAAAAATGGCTGAAGTTA
GTTTAATGAAGGCCTTGACTGGAGATAATCCCATTCTTTTACTAGACGATGTCATGAGCGAGCTAGACAATACACGACAA
ACAAAGTTACTTGAAACAGTAATTAAAGAAAATGTCCAAACCTTTATCACAACAACAAGTTTGGATCACCTGTCACAGTT
GCCAGAAGGTATCCGTATTTTTCACGTGACAAAAGGAACCGTTCAAATTGATTCTGATATTCACTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-360)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5X9A5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

62.842

99.457

0.625
  recF Bacillus subtilis subsp. subtilis str. 168

45.722

100

0.465

Multiple sequence alignment