Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | OAM_RS02660 | Genome accession | NZ_CP166824 |
| Coordinates | 563550..564104 (+) | Length | 184 a.a. |
| NCBI ID | WP_010434324.1 | Uniprot ID | A0A7Z1MML7 |
| Organism | Vibrio cyclitrophicus ZF14 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 558550..569104
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OAM_RS02645 (OAM_002645) | uvrA | 558578..561409 (-) | 2832 | WP_010434318.1 | excinuclease ABC subunit UvrA | - |
| OAM_RS02650 (OAM_002650) | galU | 561593..562465 (-) | 873 | WP_004735975.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| OAM_RS02655 (OAM_002655) | qstR | 562623..563270 (-) | 648 | WP_010434322.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| OAM_RS02660 (OAM_002660) | ssb | 563550..564104 (+) | 555 | WP_010434324.1 | single-stranded DNA-binding protein | Machinery gene |
| OAM_RS02665 (OAM_002665) | csrD | 564266..566281 (+) | 2016 | WP_010434326.1 | RNase E specificity factor CsrD | - |
| OAM_RS02670 (OAM_002670) | - | 566284..567726 (+) | 1443 | WP_010434328.1 | MSHA biogenesis protein MshI | - |
| OAM_RS02675 (OAM_002675) | pilO | 567726..568373 (+) | 648 | WP_010434330.1 | type 4a pilus biogenesis protein PilO | - |
| OAM_RS02680 (OAM_002680) | - | 568366..568698 (+) | 333 | WP_010434333.1 | MSHA biogenesis protein MshK | - |
Sequence
Protein
Download Length: 184 a.a. Molecular weight: 20286.42 Da Isoelectric Point: 5.2358
>NTDB_id=1035430 OAM_RS02660 WP_010434324.1 563550..564104(+) (ssb) [Vibrio cyclitrophicus ZF14]
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGNQQQGGWGQPQQPQQQQQQYSAPAQQQPKAP
QQAPQQAQPQYNEPPMDFDDDIPF
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGNQQQGGWGQPQQPQQQQQQYSAPAQQQPKAP
QQAPQQAQPQYNEPPMDFDDDIPF
Nucleotide
Download Length: 555 bp
>NTDB_id=1035430 OAM_RS02660 WP_010434324.1 563550..564104(+) (ssb) [Vibrio cyclitrophicus ZF14]
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCTGAAATTCGTTACATGCCGAATGG
CGGCGCAGTAGCGAACATTACCATTGCAACGTCAGAGTCATGGCGTGACAAAGCAACTGGCGAACAGCGTGAAAAAACAG
AATGGCACCGTGTTGCTCTGTTTGGCAAGCTGGCGGAAGTTGCTGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACATT
GAAGGTCAACTTCAGACTCGTAAATGGCAAGATCAAAGCGGTCAAGATCGCTACACAACTGAAGTGGTTGTTCAAGGCTT
CAACGGTGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGCGGTGCTCCTGCTCAAGGTGGTATGGGTAACCAACAGCAAG
GTGGTTGGGGTCAACCACAGCAACCACAACAACAGCAGCAACAATACAGTGCTCCTGCTCAACAGCAGCCGAAAGCACCT
CAACAAGCTCCTCAGCAGGCTCAACCTCAATATAATGAGCCACCGATGGATTTTGATGATGACATCCCATTTTAG
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCTGAAATTCGTTACATGCCGAATGG
CGGCGCAGTAGCGAACATTACCATTGCAACGTCAGAGTCATGGCGTGACAAAGCAACTGGCGAACAGCGTGAAAAAACAG
AATGGCACCGTGTTGCTCTGTTTGGCAAGCTGGCGGAAGTTGCTGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACATT
GAAGGTCAACTTCAGACTCGTAAATGGCAAGATCAAAGCGGTCAAGATCGCTACACAACTGAAGTGGTTGTTCAAGGCTT
CAACGGTGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGCGGTGCTCCTGCTCAAGGTGGTATGGGTAACCAACAGCAAG
GTGGTTGGGGTCAACCACAGCAACCACAACAACAGCAGCAACAATACAGTGCTCCTGCTCAACAGCAGCCGAAAGCACCT
CAACAAGCTCCTCAGCAGGCTCAACCTCAATATAATGAGCCACCGATGGATTTTGATGATGACATCCCATTTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
81.72 |
100 |
0.826 |
| ssb | Glaesserella parasuis strain SC1401 |
57.219 |
100 |
0.582 |
| ssb | Neisseria meningitidis MC58 |
47.826 |
100 |
0.478 |
| ssb | Neisseria gonorrhoeae MS11 |
47.826 |
100 |
0.478 |