Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   OAM_RS02655 Genome accession   NZ_CP166824
Coordinates   562623..563270 (-) Length   215 a.a.
NCBI ID   WP_010434322.1    Uniprot ID   -
Organism   Vibrio cyclitrophicus ZF14     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 557623..568270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OAM_RS02645 (OAM_002645) uvrA 558578..561409 (-) 2832 WP_010434318.1 excinuclease ABC subunit UvrA -
  OAM_RS02650 (OAM_002650) galU 561593..562465 (-) 873 WP_004735975.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  OAM_RS02655 (OAM_002655) qstR 562623..563270 (-) 648 WP_010434322.1 LuxR C-terminal-related transcriptional regulator Regulator
  OAM_RS02660 (OAM_002660) ssb 563550..564104 (+) 555 WP_010434324.1 single-stranded DNA-binding protein Machinery gene
  OAM_RS02665 (OAM_002665) csrD 564266..566281 (+) 2016 WP_010434326.1 RNase E specificity factor CsrD -
  OAM_RS02670 (OAM_002670) - 566284..567726 (+) 1443 WP_010434328.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25125.16 Da        Isoelectric Point: 9.2506

>NTDB_id=1035429 OAM_RS02655 WP_010434322.1 562623..563270(-) (qstR) [Vibrio cyclitrophicus ZF14]
MRKSRYARTLHFLCIDPNDTYLHVKEIEKHLSIILYRMTPDELMLVDRKQSNRILLVDYKEVPQLLINCPNLTVMWKNNE
IILFNVPQQLPTSELLTYGVLKGLFYNTEQKDKISHGLQEVIGGDNWLPRKVTNQLLFYYRNMVNTNTTPTNVDLTIREI
QVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQNLLA

Nucleotide


Download         Length: 648 bp        

>NTDB_id=1035429 OAM_RS02655 WP_010434322.1 562623..563270(-) (qstR) [Vibrio cyclitrophicus ZF14]
ATGAGAAAATCTCGATATGCTCGCACTTTACACTTTCTGTGCATCGATCCAAACGACACCTATCTACATGTAAAAGAGAT
AGAAAAACACTTATCTATTATTCTCTACCGCATGACGCCCGACGAATTAATGTTAGTTGATAGAAAGCAGAGCAACCGAA
TCTTGCTCGTCGATTACAAAGAGGTTCCACAACTACTGATTAATTGTCCTAACCTGACTGTTATGTGGAAAAACAATGAG
ATCATCTTGTTCAATGTCCCTCAGCAACTTCCAACTTCAGAGCTTCTTACCTATGGGGTTCTAAAAGGGCTCTTTTACAA
TACCGAGCAAAAGGACAAGATTTCTCATGGTCTTCAAGAAGTCATTGGTGGTGATAATTGGTTACCACGAAAAGTAACCA
ATCAACTGCTTTTTTATTACCGTAATATGGTGAACACCAACACGACACCCACCAATGTAGATTTGACGATCAGAGAAATC
CAAGTGATCCGTTGCCTTCAATCGGGGTCATCCAACACTCAAATCGCCGATGATTTATTTATTAGCGAGTTCACCGTAAA
GTCACACCTTTATCAGATCTTCCGTAAGTTAGCGGTTAAGAATAGAGTCCAAGCTATCGCATGGGCTAATCAGAACTTAC
TTGCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

53.023

100

0.53
  qstR Vibrio parahaemolyticus RIMD 2210633

52.558

100

0.526
  qstR Vibrio cholerae strain A1552

48.598

99.535

0.484

Multiple sequence alignment