Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   STAB904_RS06375 Genome accession   NZ_CP007241
Coordinates   1283978..1284643 (-) Length   221 a.a.
NCBI ID   WP_038434192.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 1E1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1278978..1289643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STAB904_RS06370 (STAB904_07145) hpf 1283350..1283898 (-) 549 WP_002988974.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  STAB904_RS06375 (STAB904_07150) comFC/cflB 1283978..1284643 (-) 666 WP_038434192.1 ComF family protein Machinery gene
  STAB904_RS06380 (STAB904_07155) comFA/cflA 1284615..1285940 (-) 1326 WP_038434193.1 DEAD/DEAH box helicase Machinery gene
  STAB904_RS06385 (STAB904_07160) - 1285996..1286628 (+) 633 WP_002988970.1 YigZ family protein -
  STAB904_RS06390 (STAB904_07165) cysK 1286756..1287697 (+) 942 WP_038434194.1 cysteine synthase A -
  STAB904_RS06395 (STAB904_07170) - 1287715..1288092 (-) 378 WP_002991882.1 S1 RNA-binding domain-containing protein -
  STAB904_RS06400 (STAB904_07175) - 1288092..1289492 (-) 1401 WP_038434195.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25235.48 Da        Isoelectric Point: 9.3379

>NTDB_id=103527 STAB904_RS06375 WP_038434192.1 1283978..1284643(-) (comFC/cflB) [Streptococcus pyogenes strain 1E1]
MICLLCQQISQTPISITEIIFLRRISSPICQQCQKSFQKIGKSVCATCCANSDIIACRDCLKWENKGYNVNHRSLYCYNA
AMKAYFSQYKFQGDYLLRKVFAVELADVITKYYKGYIPVPVPVSPDCFRERQFNQVSAILEAANVSYLSLFEKLDNTHQS
SRTKKERLLIEKSYRLLKVSNIPDKILIVDDIYTTGSTIIALRKQLAKVANSDIKSLSIAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=103527 STAB904_RS06375 WP_038434192.1 1283978..1284643(-) (comFC/cflB) [Streptococcus pyogenes strain 1E1]
ATGATCTGTCTACTATGTCAACAAATTAGTCAAACACCAATAAGTATTACAGAAATCATCTTTTTAAGGCGTATCTCTTC
ACCGATTTGTCAACAATGTCAAAAAAGCTTTCAAAAGATAGGAAAAAGTGTTTGTGCGACATGTTGTGCAAACTCAGATA
TAATAGCTTGTCGAGATTGTCTAAAATGGGAAAACAAAGGATACAATGTAAATCATAGAAGCTTATATTGTTATAATGCT
GCTATGAAAGCATACTTCAGTCAATATAAGTTTCAAGGAGACTATTTATTAAGAAAAGTTTTTGCAGTAGAACTTGCCGA
TGTTATTACCAAGTACTATAAAGGCTATATCCCAGTCCCGGTTCCTGTAAGTCCCGATTGTTTTCGAGAAAGACAATTTA
ATCAAGTGAGCGCTATTCTTGAGGCAGCTAATGTTAGCTACCTTTCTCTTTTTGAAAAGCTAGATAATACTCACCAATCT
TCCAGAACAAAAAAAGAGAGATTATTAATAGAAAAATCTTATCGACTACTAAAAGTATCAAACATTCCTGATAAAATCCT
TATAGTAGATGATATTTATACTACTGGTAGTACAATTATCGCTCTTAGAAAACAATTGGCTAAAGTAGCAAATAGTGACA
TTAAAAGTTTGTCAATTGCACGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae Rx1

42.081

100

0.421
  comFC/cflB Streptococcus pneumoniae D39

42.081

100

0.421
  comFC/cflB Streptococcus pneumoniae R6

42.081

100

0.421
  comFC/cflB Streptococcus pneumoniae TIGR4

42.081

100

0.421
  comFC/cflB Streptococcus mitis SK321

41.629

100

0.416
  comFC/cflB Streptococcus mitis NCTC 12261

41.176

100

0.412