Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   QUF19_RS14435 Genome accession   NZ_AP028067
Coordinates   3258793..3259773 (-) Length   326 a.a.
NCBI ID   WP_029223238.1    Uniprot ID   A0A1R3EA79
Organism   Vibrio sp. FE10     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 3253793..3264773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUF19_RS14420 recA 3254289..3255329 (-) 1041 WP_029223240.1 recombinase RecA Machinery gene
  QUF19_RS14425 pncC 3255469..3255963 (-) 495 WP_286294743.1 nicotinamide-nucleotide amidase -
  QUF19_RS14430 mutS 3256087..3258648 (+) 2562 WP_286294744.1 DNA mismatch repair protein MutS -
  QUF19_RS14435 rpoS 3258793..3259773 (-) 981 WP_029223238.1 RNA polymerase sigma factor RpoS Regulator
  QUF19_RS14440 nlpD 3259871..3260785 (-) 915 WP_286294745.1 murein hydrolase activator NlpD -
  QUF19_RS14445 - 3260821..3261447 (-) 627 WP_017108696.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  QUF19_RS14450 surE 3261448..3262191 (-) 744 WP_102436062.1 5'/3'-nucleotidase SurE -
  QUF19_RS14455 truD 3262268..3263314 (-) 1047 WP_286294747.1 tRNA pseudouridine(13) synthase TruD -
  QUF19_RS14460 ispF 3263337..3263816 (-) 480 WP_004735397.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  QUF19_RS14465 ispD 3263819..3264520 (-) 702 WP_017090808.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 37246.48 Da        Isoelectric Point: 5.4366

>NTDB_id=103528 QUF19_RS14435 WP_029223238.1 3258793..3259773(-) (rpoS) [Vibrio sp. FE10]
MSISNAVTKEEFDLNQATTEPEALGKAKRTVKKKAETKEETEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIASKLDKPVGDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNSDPE
VSTQDSDIKNSLIFWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREISLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVEND

Nucleotide


Download         Length: 981 bp        

>NTDB_id=103528 QUF19_RS14435 WP_029223238.1 3258793..3259773(-) (rpoS) [Vibrio sp. FE10]
ATGAGTATAAGCAATGCAGTAACCAAAGAAGAGTTCGATCTTAACCAAGCAACCACGGAACCGGAAGCTCTTGGAAAAGC
AAAACGAACAGTCAAAAAGAAAGCCGAAACGAAAGAAGAGACTGAAGTTACATCTAAGAGTTTAGATGCTACTCAACTCT
ACTTAGGCGAAATCGGTTTCTCACCACTATTAACCGCTGAAGAAGAAGTGCTTTATGCACGTCGAGCTCTACGCGGTGAT
GAAGCAGCACGCAAACGCATGATCGAAAGTAACCTGCGTTTGGTGGTAAAAATTTCTCGTCGTTATAGCAACCGTGGTCT
TGCACTTCTCGATCTTATTGAAGAAGGCAACCTAGGTTTGATTCGCGCCGTAGAGAAGTTTGACCCAGAGCGTGGCTTCC
GCTTCTCAACTTACGCGACATGGTGGATTCGTCAAACCATTGAACGTGCACTAATGAATCAGACTCGCACTATCCGTTTG
CCAATTCATGTTGTGAAAGAGCTGAACATCTACCTGCGTACTGCGCGAGAGCTATCACAAAAACTTGACCACGAACCAAC
GGCTGAAGAGATCGCTTCTAAGCTAGATAAACCAGTTGGTGATGTGAGTAAGATGCTTCGTCTAAACGAAAGAGTGAGCT
CCGTTGATACGCCGATTGGTGGTGATGGTGAGAAAGCGCTACTGGATATTATTCCGGACATCAACAATTCAGATCCAGAG
GTTTCAACTCAAGATAGCGATATCAAGAACTCGTTGATTTTCTGGCTTGATGAGCTGAATCCTAAGCAGAAAGAGGTGCT
TGCGCGTCGCTTTGGATTACTTGGCTACGAACCGTCAACATTAGAAGAAGTAGGCCGTGAAATCAGCCTGACTCGTGAAC
GTGTTCGTCAAATCCAAGTTGAAGGTCTTCGTCGTCTACGTGAGATTCTAATCAAGCAAGGCTTGAACATGGAAAATCTG
TTCAACGTAGAAAACGACTAA

Domains

Predicted by InterproScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(49-82)

Sigma-70 region 3 (Sigma70_r3)

(167-240)

Sigma-70 region 2 (Sigma70_r2)

(87-156)

Sigma-70, region 4 (Sigma70_r4)

(255-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R3EA79

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

81.437

100

0.834

Multiple sequence alignment